Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10037 ATGTCTTCTTCATCCTCCTCCAATCATCAATGGATCTACGACGTGTTCATCAATTTCAGGGGGGAAGACACTCGTAGGACATTCGTTTCTCATCTCTATGCTTCCCTCTCCAATGCCGGAATCAACGCTTTCATGGACGATAAGAAGCTTGGCAAGGGACTGAGGCTGAAACCAGAACTATTGCGGGCAATTGAAGGCTCTCAGATAGCTCTCGTTGTTCTCTCCAGAAACTATTCTTCATCTTGTTGGTGTCTTAACGAGCTGGACAAAATCATGGAATGCCACATAACATATGGCCAAGTGGTTTTGCCTATATTTTACGACGTTGATCCATCCGATGTGCGCCATCAGAAGGGTGCTTTTGGAAAAGCTTTGGAAGCAACTGCTAAAGAAAGGTACTCAGGGGGAGTGATGATAGACGTGTTGTGCACTTGGAGGAGAATACTCACGGAAGCAGCAAATTTTGGTGGTTGGGATGTGAGATTGTGGGGGAATGAAGCTGAACCAGTGAAGAAAATTGTTGAGTCTGTTTTGGAGAAGCTAGACCATACATTCTTGTCTATTACTGATTTTCCGGTTGGGTTGGAATCCCGTGTGCAAGAAGTGATTGCATTTATCCAAAATCAATCAAGCAAAGTTTGTATAGTAGGAATCTGGGGAATGGGAGGGTCTGGTAAAACAACCACAGCCAAAGTCATCTACAATAGAATTCATCGCAAATTTGTGGATAGAAGTTTTGTTGAAAATATTCGAGAAGTGTGTGAGAAAGATCGTACCGGGCATATTCATTTACAAGAACAACTTCTTTCAGATGTCCTAAACACAAAGGTGAAGATACATAGTATTGCTCTGGGGAAAAATATGATCGAGAAAAGACTTTGCGGGAAAAGGGTACTCATTGTACTTGATGATGTAAATAAGTTTGAGCAATTAAAAGCACTATGTGGAAATCGTAAATGGTTTGGTTCAGGAAGTATATTAATTGTTACAACCAGAGATTTACGCCTTCTCACTTTACTTGAAGTTGACCATGTCTATACAGTGAAGGAAATGGATAAAAATGAATCCCTTGAGCTTTTCAGTTGGCATGCTTTTCGAAAAGCTAGCCCAGGAGAAAACTTCAGGGAACTCTCAAGAAACGTAGTTGCTTATTGTGGAGGATTGCCGCTAGCTCTTGAAGTTCTTGGATCCTACTTATATGAAAGGACAGAACAAGAATGGAAAAGTGTATTATCCAAACTAGAGAGAATTCCCAATGATCAAGTACAAGAGAAACTGAGAATAAGCTTTGATGGTTTAAAGGATGATATGGAAAAGGATATATTTCTTGACATATGTTGTTTCTTTATTGGTAAGGATAGGGCCTATGTTACAGAGATACTAAATGGCTGTGGACTTTATGCTGGGATTGGAATAGCTGTCCTCATTGAGCGGAGCCTTGTAAAAGTTGAAAAGAATAACAAGCTTCGAATGCATGATTTACTTCGAGACATGGGAAGAGAAATTGTTCGTGAAGGTTCAACAAAAGAGCCTGGGAAGCGTAGTCGATTGTGGTTTCATGAGGATGTACATGATGTTTTGACAAATAATGCTGGAACAGAAACTGTTGAGGGATTGGCTTTGAAGTTGCAAAGAACCGGCAGAGTATGCTTCAGTACTAATGCTTTTAAGGAAATGAAGAAACTGAGACTTATAAAACTTGATCATGTTGACCTCACTGGAGATTATGGGTATCTTTCCAAGCAACTGAGATTGGTCTGTTGGCAAGGCTTTGCCTTCAAATATATACCCGATGAATTTTATCTGGGAAATGTGGTTGTTATTGACTTAAAATACAGCAATATTAAACAAATTTGGAAGGAAACCAAGTTGCTGGAGAAGCTAAAAATTCTCAATCTCAGTCATTCTAGGTACTTGACAAATACCCCTGACTTTTCAAAACTACCAAATCTAGAAAAGCTCATTCTGAAGGATTGTCCAAGTTTGTCCGAGGTACACCAATCCATTGGAGATCTTAATAATCTTCTTCTGATAAATTTGAAGGACTGTACGAACATTAGCAATCTACCAAGGAAGATCTATGAGTTAAAGTTTTTGAAAACTCTCATTCTTTCTGGTTGTTCAAAGATTGATAAGTTGGAAGAAGATATAGTGCAGATGGAATCCTTGACAACACTGATTGCAAAAGATACAGCTGTGAAAGAAGTGCCCTATTCAATAATAAGGTCAAAAAGCATTGGATATATATCCCTATGTGGATATGAAGGATTATCTTGGGATGTTTTCCCTTCTCTCATTTGGTCTTGGATGTCACCAACAATGAATTCCCTTCACCGAATTCCCCCATTTTTTAGCATGGATCTAGAGTGTGATAATTTGGGCTATCAATCACCAATGGTTAGCAGCCTTTCAAAACTTAGAAGTGTTCGGGTACAATGCCGCTCAGAGATTCAACTAACTCAAGAATTAAGAAGATTTCTTGACGATCTATATGATGTAAGCTTTACTGAATTGGGAGCAACATCATATACGTCACAGAACTCTGATCATTCCTTGAGATCGCTTTTGATTGGAATGGGAAGTTGTCACATAGTCATCGATACTCTTGGCCAGGGCATATCACAGGGATTGACAACCAATGATTCTAGTGATTTTTTCCTCTCGGGTGATAATTATCCTTCTTGGTTAGCCTATACAAGTGAAGGACCTTCAGTACTTTTTCAAGTTCCTGAGGATAGTGATTGTTGCATGAAGGGAATAACTTTATGTGTTGTTTATTCATCATCTGAAAAGATGGCAGCTGAATGTCTTACTAGTGCCTTGATCATTAATTACACAAAGTGCAATATCCAGATATACAGGCGAGACACAGCAATGTCCTTTAATGATGAAGATTGGCAAGGTATAATATCAAATCTAGGACCTGGTGACAATGTGGAGATTTTTGCTGCTTTTGGGCATGGATTGACTGTTAAGGAGACCGCTGTATATCTAACATATGGCTAG 3006 0.3919 MSSSSSSNHQWIYDVFINFRGEDTRRTFVSHLYASLSNAGINAFMDDKKLGKGLRLKPELLRAIEGSQIALVVLSRNYSSSCWCLNELDKIMECHITYGQVVLPIFYDVDPSDVRHQKGAFGKALEATAKERYSGGVMIDVLCTWRRILTEAANFGGWDVRLWGNEAEPVKKIVESVLEKLDHTFLSITDFPVGLESRVQEVIAFIQNQSSKVCIVGIWGMGGSGKTTTAKVIYNRIHRKFVDRSFVENIREVCEKDRTGHIHLQEQLLSDVLNTKVKIHSIALGKNMIEKRLCGKRVLIVLDDVNKFEQLKALCGNRKWFGSGSILIVTTRDLRLLTLLEVDHVYTVKEMDKNESLELFSWHAFRKASPGENFRELSRNVVAYCGGLPLALEVLGSYLYERTEQEWKSVLSKLERIPNDQVQEKLRISFDGLKDDMEKDIFLDICCFFIGKDRAYVTEILNGCGLYAGIGIAVLIERSLVKVEKNNKLRMHDLLRDMGREIVREGSTKEPGKRSRLWFHEDVHDVLTNNAGTETVEGLALKLQRTGRVCFSTNAFKEMKKLRLIKLDHVDLTGDYGYLSKQLRLVCWQGFAFKYIPDEFYLGNVVVIDLKYSNIKQIWKETKLLEKLKILNLSHSRYLTNTPDFSKLPNLEKLILKDCPSLSEVHQSIGDLNNLLLINLKDCTNISNLPRKIYELKFLKTLILSGCSKIDKLEEDIVQMESLTTLIAKDTAVKEVPYSIIRSKSIGYISLCGYEGLSWDVFPSLIWSWMSPTMNSLHRIPPFFSMDLECDNLGYQSPMVSSLSKLRSVRVQCRSEIQLTQELRRFLDDLYDVSFTELGATSYTSQNSDHSLRSLLIGMGSCHIVIDTLGQGISQGLTTNDSSDFFLSGDNYPSWLAYTSEGPSVLFQVPEDSDCCMKGITLCVVYSSSEKMAAECLTSALIINYTKCNIQIYRRDTAMSFNDEDWQGIISNLGPGDNVEIFAAFGHGLTVKETAVYLTYG. 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10037 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 445 IPR027417 -
Seca3g10037 1001 Gene3D - 10 182 IPR035897 -
Seca3g10037 1001 SUPERFAMILY "Winged helix" DNA-binding domain 421 527 IPR036390 -
Seca3g10037 1001 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 158 IPR035897 -
Seca3g10037 1001 PRINTS Disease resistance protein signature 385 399 - -
Seca3g10037 1001 PRINTS Disease resistance protein signature 292 306 - -
Seca3g10037 1001 PRINTS Disease resistance protein signature 623 639 - -
Seca3g10037 1001 PRINTS Disease resistance protein signature 215 230 - -
Seca3g10037 1001 SUPERFAMILY L domain-like 541 857 - -
Seca3g10037 1001 Pfam NB-ARC domain 196 418 IPR002182 GO:0043531
Seca3g10037 1001 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 183 - -
Seca3g10037 1001 ProSiteProfiles TIR domain profile. 11 181 IPR000157 GO:0007165
Seca3g10037 1001 Gene3D Ribonuclease Inhibitor 540 860 IPR032675 -
Seca3g10037 1001 SMART till_3 12 155 IPR000157 GO:0007165
Seca3g10037 1001 Pfam TIR domain 13 190 IPR000157 GO:0007165
Seca3g10037 1001 Gene3D - 350 434 IPR042197 -
Seca3g10037 1001 Gene3D - 183 345 IPR027417 -
Seca3g10037 1001 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 796 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10037 Seca-Chr3 244196203 244203546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10037 13 740 WRKY Transcription Factor Family AT4G12020 30.975 2.20e-85 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10037 - - gmx:100815297 1326.23