Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10029 ATGGAAGGGGAGAGAGATGTTCCCAATTATGAGCTTCAGGTTTCATTCACAAACACACCTCAACCCATCCATGAAATGGCTTTTGTTCAATTTGAAGAAAATCAAGTTCTTAGCTTCTTAGCTCCTTCTACACAATCTCAATCTCTAAACACCGCCACCACCACCACTGCTACTGCCACCGCCACCGTTGCCGCCGCAACCACAACCACCATTGGGTTCAGCCATAATGACCTTCTCACCAGAACTTCTTGGAATAATAACGAACAGGTGAGAACTCTGGATCCCAAGGCTGTTAATAATGATGAAAATTGCACTGGAGGAAATACAAGTGATGGAAACAACACATGGTGGAGGAGTGGAGGGTCAGAGAAGAGCAAGGTGAAAGTAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTGGATGTGCTTGATGATGGTTACAAATGGAGGAAGTATGGTCAGAAAGTTGTCAAAAATAGCCTTCATCCAAGAAGTTATTACCGCTGCACCCATAACAATTGTAGGGTGAAAAAAAGAGTTGAACGACTCTCAGAGGATTGTCGTATGGTGATAACCACTTACGAAGGCAGACACAATCACTCTCCTTGCGATGACTCAAATTCATCTGAACATGAATGTTTTACCTCTTTTTGA 672 0.4301 MEGERDVPNYELQVSFTNTPQPIHEMAFVQFEENQVLSFLAPSTQSQSLNTATTTTATATATVAAATTTTIGFSHNDLLTRTSWNNNEQVRTLDPKAVNNDENCTGGNTSDGNNTWWRSGGSEKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHECFTSF. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10029 223 Gene3D WRKY domain 135 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g10029 223 SMART WRKY_cls 149 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g10029 223 MobiDBLite consensus disorder prediction 97 121 - -
Seca3g10029 223 Pfam WRKY DNA -binding domain 150 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g10029 223 SUPERFAMILY WRKY DNA-binding domain 141 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g10029 223 ProSiteProfiles WRKY domain profile. 144 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g10029 223 FunFam WRKY transcription factor 57 135 209 - -
Seca3g10029 223 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 55 210 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10029 Seca-Chr3 244062418 244070078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10029 3 223 WRKY Transcription Factor Family AT2G44745 57.895 1.99e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g10029 WRKY 1.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10029 - - gmx:100800671 386.341