Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09997 ATGATGGACACTCACGCTGGAAACACCAATGTGAATGCCGTTGATCACTTTGAAACCGTCGCAACGTCGTCGTTTCAGGACGCTCCAGCTCCATCAGCGTTCTCCCGGAGTTCGAGCTTCCGGAGCATTTTCTTGGCGGAGAACTGGGCGGAGCTGCCATTGAAGGAGGACGACGCCGACGACATGGTCATCTATGGAGCCTTGCGCGAGGCCGCCACCATAGGGTGGTTCCCTGCCAACAACAAGGTTAACACCGCAGTGAAAGTGGAAAATGAGGGTGAAAACAGTGGCACTGTGGTGGCACGTGAGGTACACGCGCCGGCAAGGAAGGGGTTGGGGTACCGTGGTGTGAGGAGGAGGCCCTGGGGGAAGTATGCGGCTGAAATAAGGGACCCTAAGAGGAATGGCGCCAGGGTGTGGCTTGGGACATATGAAACGGCTGAGGATGCAGCTTTGGCTTATGATCGAGCTGCGTTTGAGATGCGCGGCTCGAAAGCCAAGTTGAATTTCCCTCACTTAATCGGCTCGGAATACAGTGGGCCCATTAGACACACGCGGGGTACATCTTTGCCGTGA 576 0.5608 MMDTHAGNTNVNAVDHFETVATSSFQDAPAPSAFSRSSSFRSIFLAENWAELPLKEDDADDMVIYGALREAATIGWFPANNKVNTAVKVENEGENSGTVVAREVHAPARKGLGYRGVRRRPWGKYAAEIRDPKRNGARVWLGTYETAEDAALAYDRAAFEMRGSKAKLNFPHLIGSEYSGPIRHTRGTSLP. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09997 191 CDD AP2 114 173 IPR001471 GO:0003700|GO:0006355
Seca3g09997 191 SMART rav1_2 113 177 IPR001471 GO:0003700|GO:0006355
Seca3g09997 191 FunFam Ethylene-responsive transcription factor 2 112 172 - -
Seca3g09997 191 PANTHER DNA-BINDING DOMAIN 84 172 IPR044808 GO:0003700|GO:0009873
Seca3g09997 191 Pfam AP2 domain 113 163 IPR001471 GO:0003700|GO:0006355
Seca3g09997 191 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Seca3g09997 191 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Seca3g09997 191 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Seca3g09997 191 SUPERFAMILY DNA-binding domain 113 172 IPR016177 GO:0003677
Seca3g09997 191 ProSiteProfiles AP2/ERF domain profile. 113 171 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09997 Seca-Chr3 243444710 243445285 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09997 34 183 AP2-EREBP Transcription Factor Family AT2G44840 58.667 8.59e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g09997 AP2 8.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09997 K09286 - gmx:100793366 254.988