Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09995 ATGTGGAAGCACTACCGGGGCGTGAGGCGTAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACCCGAAGAAGAACGGTGCCAGAGTTTGGCTTGATGCATCCAACCACCAAATCTGTTATTCATTTCCGAGCCCTAACTCTAGTGATGATTCAACGCAGCAGGCCGTTAGTAACGGCGCTGATGTGAAGAAATCAACCGCGTCCAAAAGGGGATCGTCTGCAATGGCGCGTGAATCTCACGCGCCACCGATGTGGAAGCACTACCGGGGCGTGAGGCGTAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGATCCGAAGAAGAACGGTGCTAGAGTTTGGCTTGGGACTTATGAGACGGAAGAGGAAGCTGGTTTGGCTTATGATAGAGCTGCTTTCAAGATGCGTGGCAGTAAAGCCAAGCTTAATTTTCCCCATCTCATTGGCTCCCACGCGCCGCCGGAGCCGGTGAGAGTGGTGGCACCATCAAAGCGGAACTCGCCTTGTTCGCCGGCTTCGGAGTCACAAGGGTTAAAGAAAAGGAAGAGGCTAATTGATGTATTGAATAGGTTAGCAAAGTATAGAAGGCAAGTGCATGTGTTTGAATTTGAAATGAGTTCACAGGCAAATGATGTTGATCAATGGATGAATAAGTTAGAAGAACACTTGACTGTGGTGTAA 684 0.5146 MWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLDASNHQICYSFPSPNSSDDSTQQAVSNGADVKKSTASKRGSSAMARESHAPPMWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSHAPPEPVRVVAPSKRNSPCSPASESQGLKKRKRLIDVLNRLAKYRRQVHVFEFEMSSQANDVDQWMNKLEEHLTVV. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09995 227 CDD AP2 87 148 IPR001471 GO:0003700|GO:0006355
Seca3g09995 227 SMART rav1_2 4 50 IPR001471 GO:0003700|GO:0006355
Seca3g09995 227 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Seca3g09995 227 MobiDBLite consensus disorder prediction 43 82 - -
Seca3g09995 227 FunFam Ethylene-responsive transcription factor 2 87 147 - -
Seca3g09995 227 SUPERFAMILY DNA-binding domain 4 33 IPR016177 GO:0003677
Seca3g09995 227 SUPERFAMILY DNA-binding domain 88 147 IPR016177 GO:0003677
Seca3g09995 227 ProSiteProfiles AP2/ERF domain profile. 4 34 IPR001471 GO:0003700|GO:0006355
Seca3g09995 227 MobiDBLite consensus disorder prediction 43 74 - -
Seca3g09995 227 PANTHER DNA-BINDING DOMAIN 4 32 IPR044808 GO:0003700|GO:0009873
Seca3g09995 227 Gene3D AP2/ERF domain 87 147 IPR036955 GO:0003700|GO:0006355
Seca3g09995 227 Gene3D AP2/ERF domain 3 39 IPR036955 GO:0003700|GO:0006355
Seca3g09995 227 PRINTS Ethylene responsive element binding protein signature 128 148 IPR001471 GO:0003700|GO:0006355
Seca3g09995 227 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700|GO:0006355
Seca3g09995 227 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Seca3g09995 227 Pfam AP2 domain 4 32 IPR001471 GO:0003700|GO:0006355
Seca3g09995 227 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09995 Seca-Chr3 243390556 243397802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09995 4 32 AP2-EREBP Transcription Factor Family AT2G44840 96.552 1.85e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca3g09995 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09995 K09286 - gmx:100527194 229.95