Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09994 ATGAATCTGGAGTTCAGTACTAGTCTTGAATCCGATCTTGCTCTTCTCGAATCCATTCGACGCTACCTCCTCCACGAAGACGAAGACTTCGATGCTCTTATGGCGATTTCCGCCACATCTCACGCCGTCAACCACGGCTCAACCTCTTCTTCAGCCACAGAGAGTGGCACTGCAGGCAGTGAACCAACGTCCACCACCCTTTACGATAACGCCGTGAACTCTCCGTTAATTTCATCGACCACAGTTAATCCTGCCTTGGGTGATTGCAGTGTTTCTTCTTCTACAGCTTCGCGTGAAAGCCACGCGTCAGTGAGTTGGCAGAGGTACAAGGGAGTGAGGCGAAGGCCGTGGGGGAAATTTGCAGCGGAGATAAGGGATCCAAAGAAGAACGGCGCAAGGGTATGGCTAGGGACTTATGAAACGGCTGAGGATGCGGCTTTGGCTTATGACCGAGCCGCTTTCAAAATGCGCGGCTCAAAAGCTAAGCTCAATTTTCCACATTTGGTTGGCTCTGATGATCCTGAGCCATTGGTGACGGCTAAGCGGCGTGCACCAGAGCCGTGTTTGGAGCCGAAAAGAAAAATGAGCCGAGTCAGCGTCGTTGACACGTCAGATAAATGGGAATTGGAGTCTATGATGATATTCCAAGGAATCATCTAA 660 0.5076 MNLEFSTSLESDLALLESIRRYLLHEDEDFDALMAISATSHAVNHGSTSSSATESGTAGSEPTSTTLYDNAVNSPLISSTTVNPALGDCSVSSSTASRESHASVSWQRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYETAEDAALAYDRAAFKMRGSKAKLNFPHLVGSDDPEPLVTAKRRAPEPCLEPKRKMSRVSVVDTSDKWELESMMIFQGII. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09994 219 Gene3D AP2/ERF domain 107 168 IPR036955 GO:0003700|GO:0006355
Seca3g09994 219 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Seca3g09994 219 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Seca3g09994 219 PANTHER DNA-BINDING DOMAIN 55 181 IPR044808 GO:0003700|GO:0009873
Seca3g09994 219 CDD AP2 107 168 IPR001471 GO:0003700|GO:0006355
Seca3g09994 219 Pfam AP2 domain 108 158 IPR001471 GO:0003700|GO:0006355
Seca3g09994 219 FunFam Ethylene-responsive transcription factor 2 107 167 - -
Seca3g09994 219 SUPERFAMILY DNA-binding domain 108 167 IPR016177 GO:0003677
Seca3g09994 219 ProSiteProfiles AP2/ERF domain profile. 108 166 IPR001471 GO:0003700|GO:0006355
Seca3g09994 219 SMART rav1_2 108 172 IPR001471 GO:0003700|GO:0006355
Seca3g09994 219 MobiDBLite consensus disorder prediction 44 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09994 Seca-Chr3 243386878 243387537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09994 108 189 AP2-EREBP Transcription Factor Family AT2G44840 77.108 4.95e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca3g09994 AP2 1.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09994 K09286 - vvi:100853485 159.844