LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g09989	ATGGTTGTACTTATGGCTGCAAGAGCATCAAGGCTAGAGAACCAGGATGCAATTGATTGTGCAATTGTTTCAATGTTGGCAGACCCAAAGGAGGCAAGAGCTGGAATAAAAGAAGTTCACTTCCTTCCATTCAATCCGACAGATAAAAGAACTGCACTTACATACATTGATGCTGCTGGTAAGATGCACAGGGTTAGCAAAGGTGCACCAGAACAGATTCTCAACCTTGCACATAACAAAGCAGAAATTAGACAGAAGGTTCATTCAATCATTGACAAGTTTGCAGAACGTGGACTTCGTTCTCTTGCAGTTGCTCGCCAGGAAGTACCTGAGGGAAATAAAGACAGTCCAGGAGCACCATGGGAGTTTGTTGGCCTTCTCCCTCTTTTTGACCCTCCTCGTCATGATAGCGCAGAAACAATCAGAAGAGCTCTTGATCTTGGTGTCAGTGTCAAAATGATCACTGGTGATCAACTTGCAATAGGTAAGGAAACAGGAAGGCGTCTAGGGATGGGCACTAACATGTATCCTTCTTCATCACTGCTTGGTGAAAATAAAGATGAATTGGGTGCTGTCTCCATTGATGATCTCATTGAGAGTGCTGATGGTTTTGCTGGTGTCTTCCCTGAGCACAAGTATGAGATTGTGAAGAGGTTACAAGCTCGAAAGCACATTTGTGGGATGACTGGTGATGGGGTGAATGATGCACCAGCCCTAAAGATAGCTGACATAGGTATTGCAGTAGCAGATTCTACAGATGCTGCCAGAAGTGCTGCTGACATAGTGCTAACAGAACCTGGCTTGAGTGTGATCATAAGTGCAGTTTTAACTAGCCGTGCAATTTTCCAGAGAATGAAAAACTACACAATATATGCTGTATCTATCACTATTCGTATTGTGCTGGGTTTCATGTTACTTAACTGCTTTTGGAAATTTGACTTTCCTCCCTTCATGGTTCTTGTCATTGCCATCCTCAATGATGGTACCATCATGACAATATCCAAAGACAGGGTTAAGCCTTCTCCAGTTCCTGATAGTTGGAAGCTTAGTGAAATTTTTGCAACTGGGATTATTCTTGGTAGCTATCTGGCTCTAATGACAGTGATCTTCTTCTGGGTAGTTTTTGAAACAAACTTCTTTCCAAACATTCTGCTCCAGAACCATTTTGGTGTGAGACATTTCCGCGCCACTACAAATGATCCTGTTACTGATGAAATGAAACAAATGTTGGCATCTGCTGTCTATCTTCAAGTCAGTACAATTAGCCAAGCCTTAATCTTTGTGACACGCTCTAGGGGTTGGTCCTACACAGAAAGACCTGGTGTTTTGCTTGTTATTGCCTTTGTTATTGCTCAGCTGGTTGCAACTGTTATATCTGCCACTGCCACTTGGAAAATTGCTGGAATCAGAAGCATAGGTTGGGGCTGGACAGGAGTCATTTGGTTGTTCAATACTATAACTTATATTTTTCTGGATCCTTTAAAGTTTGCTGTTCGTTATGCACTAAGTGGAAGGGCATGGAATCTGGTGGTAGACCAAAGAACTGCATTCACAAACAAAAATGACTTTGGAAGAGAAGCTCGTGAGGCTGCATGGGCTGCTGAACAGAGAACCTTGCATGGCCTTCGCTCTGTTGAGTCAAAAACATACACAGAGAAACACACCTTTAGAGAAATAAATACATTGGCAGAAGAGGCCAGGAGGCGAGCAGAGATAGCAAGGTTGAGAGAGCTTCACACTCTTAAAGGTAGAGTGGAATCGTTTGCCAAGCTAAGGGGTTTGGATATCGATGCCATGAACGGGCACTATACAGTCTAA	1818	0.4307	MVVLMAARASRLENQDAIDCAIVSMLADPKEARAGIKEVHFLPFNPTDKRTALTYIDAAGKMHRVSKGAPEQILNLAHNKAEIRQKVHSIIDKFAERGLRSLAVARQEVPEGNKDSPGAPWEFVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDELGAVSIDDLIESADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADSTDAARSAADIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLNCFWKFDFPPFMVLVIAILNDGTIMTISKDRVKPSPVPDSWKLSEIFATGIILGSYLALMTVIFFWVVFETNFFPNILLQNHFGVRHFRATTNDPVTDEMKQMLASAVYLQVSTISQALIFVTRSRGWSYTERPGVLLVIAFVIAQLVATVISATATWKIAGIRSIGWGWTGVIWLFNTITYIFLDPLKFAVRYALSGRAWNLVVDQRTAFTNKNDFGREAREAAWAAEQRTLHGLRSVESKTYTEKHTFREINTLAEEARRRAEIARLRELHTLKGRVESFAKLRGLDIDAMNGHYTV.	606

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g09989	605	Pfam	haloacid dehalogenase-like hydrolase	60	243	-	-
	Seca3g09989	605	SUPERFAMILY	Calcium ATPase, transmembrane domain M	278	502	IPR023298	-
	Seca3g09989	605	PRINTS	P-type cation-transporting ATPase superfamily signature	252	264	-	-
	Seca3g09989	605	PRINTS	P-type cation-transporting ATPase superfamily signature	125	136	-	-
	Seca3g09989	605	PRINTS	P-type cation-transporting ATPase superfamily signature	229	248	-	-
	Seca3g09989	605	PRINTS	P-type cation-transporting ATPase superfamily signature	147	157	-	-
	Seca3g09989	605	Gene3D	-	1	130	IPR023299	GO:0000166
	Seca3g09989	605	PRINTS	H+-transporting ATPase (proton pump) signature	201	217	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Seca3g09989	605	PRINTS	H+-transporting ATPase (proton pump) signature	260	285	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Seca3g09989	605	PRINTS	H+-transporting ATPase (proton pump) signature	415	436	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g09989	Seca-Chr3	243353745	243358468	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g09989	2	605	Primary Pumps ATPases	AT5G62670	76.694	0.0	965

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g09989	K01535		-	gmx:100806187	1057.74

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