Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09989 ATGGTTGTACTTATGGCTGCAAGAGCATCAAGGCTAGAGAACCAGGATGCAATTGATTGTGCAATTGTTTCAATGTTGGCAGACCCAAAGGAGGCAAGAGCTGGAATAAAAGAAGTTCACTTCCTTCCATTCAATCCGACAGATAAAAGAACTGCACTTACATACATTGATGCTGCTGGTAAGATGCACAGGGTTAGCAAAGGTGCACCAGAACAGATTCTCAACCTTGCACATAACAAAGCAGAAATTAGACAGAAGGTTCATTCAATCATTGACAAGTTTGCAGAACGTGGACTTCGTTCTCTTGCAGTTGCTCGCCAGGAAGTACCTGAGGGAAATAAAGACAGTCCAGGAGCACCATGGGAGTTTGTTGGCCTTCTCCCTCTTTTTGACCCTCCTCGTCATGATAGCGCAGAAACAATCAGAAGAGCTCTTGATCTTGGTGTCAGTGTCAAAATGATCACTGGTGATCAACTTGCAATAGGTAAGGAAACAGGAAGGCGTCTAGGGATGGGCACTAACATGTATCCTTCTTCATCACTGCTTGGTGAAAATAAAGATGAATTGGGTGCTGTCTCCATTGATGATCTCATTGAGAGTGCTGATGGTTTTGCTGGTGTCTTCCCTGAGCACAAGTATGAGATTGTGAAGAGGTTACAAGCTCGAAAGCACATTTGTGGGATGACTGGTGATGGGGTGAATGATGCACCAGCCCTAAAGATAGCTGACATAGGTATTGCAGTAGCAGATTCTACAGATGCTGCCAGAAGTGCTGCTGACATAGTGCTAACAGAACCTGGCTTGAGTGTGATCATAAGTGCAGTTTTAACTAGCCGTGCAATTTTCCAGAGAATGAAAAACTACACAATATATGCTGTATCTATCACTATTCGTATTGTGCTGGGTTTCATGTTACTTAACTGCTTTTGGAAATTTGACTTTCCTCCCTTCATGGTTCTTGTCATTGCCATCCTCAATGATGGTACCATCATGACAATATCCAAAGACAGGGTTAAGCCTTCTCCAGTTCCTGATAGTTGGAAGCTTAGTGAAATTTTTGCAACTGGGATTATTCTTGGTAGCTATCTGGCTCTAATGACAGTGATCTTCTTCTGGGTAGTTTTTGAAACAAACTTCTTTCCAAACATTCTGCTCCAGAACCATTTTGGTGTGAGACATTTCCGCGCCACTACAAATGATCCTGTTACTGATGAAATGAAACAAATGTTGGCATCTGCTGTCTATCTTCAAGTCAGTACAATTAGCCAAGCCTTAATCTTTGTGACACGCTCTAGGGGTTGGTCCTACACAGAAAGACCTGGTGTTTTGCTTGTTATTGCCTTTGTTATTGCTCAGCTGGTTGCAACTGTTATATCTGCCACTGCCACTTGGAAAATTGCTGGAATCAGAAGCATAGGTTGGGGCTGGACAGGAGTCATTTGGTTGTTCAATACTATAACTTATATTTTTCTGGATCCTTTAAAGTTTGCTGTTCGTTATGCACTAAGTGGAAGGGCATGGAATCTGGTGGTAGACCAAAGAACTGCATTCACAAACAAAAATGACTTTGGAAGAGAAGCTCGTGAGGCTGCATGGGCTGCTGAACAGAGAACCTTGCATGGCCTTCGCTCTGTTGAGTCAAAAACATACACAGAGAAACACACCTTTAGAGAAATAAATACATTGGCAGAAGAGGCCAGGAGGCGAGCAGAGATAGCAAGGTTGAGAGAGCTTCACACTCTTAAAGGTAGAGTGGAATCGTTTGCCAAGCTAAGGGGTTTGGATATCGATGCCATGAACGGGCACTATACAGTCTAA 1818 0.4307 MVVLMAARASRLENQDAIDCAIVSMLADPKEARAGIKEVHFLPFNPTDKRTALTYIDAAGKMHRVSKGAPEQILNLAHNKAEIRQKVHSIIDKFAERGLRSLAVARQEVPEGNKDSPGAPWEFVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDELGAVSIDDLIESADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADSTDAARSAADIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLNCFWKFDFPPFMVLVIAILNDGTIMTISKDRVKPSPVPDSWKLSEIFATGIILGSYLALMTVIFFWVVFETNFFPNILLQNHFGVRHFRATTNDPVTDEMKQMLASAVYLQVSTISQALIFVTRSRGWSYTERPGVLLVIAFVIAQLVATVISATATWKIAGIRSIGWGWTGVIWLFNTITYIFLDPLKFAVRYALSGRAWNLVVDQRTAFTNKNDFGREAREAAWAAEQRTLHGLRSVESKTYTEKHTFREINTLAEEARRRAEIARLRELHTLKGRVESFAKLRGLDIDAMNGHYTV. 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09989 605 Pfam haloacid dehalogenase-like hydrolase 60 243 - -
Seca3g09989 605 SUPERFAMILY Calcium ATPase, transmembrane domain M 278 502 IPR023298 -
Seca3g09989 605 PRINTS P-type cation-transporting ATPase superfamily signature 252 264 - -
Seca3g09989 605 PRINTS P-type cation-transporting ATPase superfamily signature 125 136 - -
Seca3g09989 605 PRINTS P-type cation-transporting ATPase superfamily signature 229 248 - -
Seca3g09989 605 PRINTS P-type cation-transporting ATPase superfamily signature 147 157 - -
Seca3g09989 605 Gene3D - 1 130 IPR023299 GO:0000166
Seca3g09989 605 PRINTS H+-transporting ATPase (proton pump) signature 201 217 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g09989 605 PRINTS H+-transporting ATPase (proton pump) signature 260 285 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g09989 605 PRINTS H+-transporting ATPase (proton pump) signature 415 436 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g09989 605 PRINTS H+-transporting ATPase (proton pump) signature 87 105 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g09989 605 PRINTS H+-transporting ATPase (proton pump) signature 229 245 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g09989 605 Gene3D - 216 501 - -
Seca3g09989 605 FunFam Plasma membrane ATPase 123 277 - -
Seca3g09989 605 FunFam Plasma membrane ATPase 1 130 - -
Seca3g09989 605 NCBIfam HAD-IC family P-type ATPase 204 308 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g09989 605 FunFam ATPase 4 plasma membrane-type 213 470 - -
Seca3g09989 605 SUPERFAMILY HAD-like 85 276 IPR036412 -
Seca3g09989 605 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 17 115 IPR023299 GO:0000166
Seca3g09989 605 Gene3D - 554 605 - -
Seca3g09989 605 PANTHER CALCIUM-TRANSPORTING ATPASE 1 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09989 Seca-Chr3 243353745 243358468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09989 2 605 Primary Pumps ATPases AT5G62670 76.694 0.0 965
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09989 K01535 - gmx:100806187 1057.74