Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09987 ATGGAAGAAATACAACGAGAGCCCATGTTAACACCAAACAAGGATGAAGAAGGAGAAGAAGCTGAAGCCCAAGTGGATATATTGAAGTACATACTTGGGTTTGCAGAAGTAGCAGTCATGAGATGTGCCATCGAGCTTCGCATAGCAGATACCATCGAAAGCCATGGAAGTCCTATGACTTTATCAGAGATATCATCAACTCTAGGGTGTGATCCTCCCCTTCTTAACCGCATCATGAGATTCTTAACACATCGGAAGATATTCAAAGCCATACCCACCAACCATGGCTACTTGAGTTATGCTCAAACACCTTTGTCTCGTCGTTTGATGAGAAATGGCGAACATAGCATGGCTGCTTTTCTTCTATTTGAGACTAGTCCTGTAGCTTTAGCACCTTGGTATAATTTAAGTTCTCGTGTTTTGGTTAATGGCAATTACCCATTTGAAAAGGCTCATGGTGAGGACTTTTGGCGCTATGGCGCAACAAATATGGATCACAACAACCTCTTCAATGAAGCAATGGCATGTGATGCTAAACTTGTTGTACCTGCCATTATGAAAGATTGTAGCGAGGCGTTTGATGGTCTTAAGACGTTGGTGGATGTGGGTGGGGGAAATGGAACAACCATACACATGTTGACTAAGGCTTGCCCTTGGATTCAAGGAATCAACTTTGATCTTCCTCATGTTATAAATACAGCTCCAAAGTGTGATCAGGTGGAACATGTTGCAGGTGACATGTTTCTAAGTGTTCCCAAAGCTGATGCTGTTTTTCTTAAGTGGATTTTGCATGATTGGGGAGACGAAGAGTGCATCCAAATATTAAAAAATTGTAGGGAAGCCATTCCAAGGGAAAATGGAAGAGTTATTATTGTGGAGGCAGTGATTGATGAAGAAGGGAAGCATGACAAGTTAAAGGATGTAAGATTGATGATGGACATGCTAATGATGGCGCATACTAAAGGAAAAGAGCGGACATTGAAAGAGTGGGAATATCTGATCAAAACGGCAGGATTTAGCACATATACTGTGAAAGCCATCCATGCCGTGCAGTCTGTGATTGTGGCTTTTCGATAA 1077 0.4197 MEEIQREPMLTPNKDEEGEEAEAQVDILKYILGFAEVAVMRCAIELRIADTIESHGSPMTLSEISSTLGCDPPLLNRIMRFLTHRKIFKAIPTNHGYLSYAQTPLSRRLMRNGEHSMAAFLLFETSPVALAPWYNLSSRVLVNGNYPFEKAHGEDFWRYGATNMDHNNLFNEAMACDAKLVVPAIMKDCSEAFDGLKTLVDVGGGNGTTIHMLTKACPWIQGINFDLPHVINTAPKCDQVEHVAGDMFLSVPKADAVFLKWILHDWGDEECIQILKNCREAIPRENGRVIIVEAVIDEEGKHDKLKDVRLMMDMLMMAHTKGKERTLKEWEYLIKTAGFSTYTVKAIHAVQSVIVAFR. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09987 358 Gene3D - 10 109 IPR036388 -
Seca3g09987 358 FunFam O-methyltransferase family protein 11 109 - -
Seca3g09987 358 Pfam Dimerisation domain 39 83 IPR012967 GO:0046983
Seca3g09987 358 FunFam O-methyltransferase family protein 111 357 - -
Seca3g09987 358 PIRSF O-mtase 5 358 IPR016461 GO:0008168
Seca3g09987 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 355 IPR029063 -
Seca3g09987 358 Gene3D Vaccinia Virus protein VP39 111 357 IPR029063 -
Seca3g09987 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 358 IPR016461 GO:0008168
Seca3g09987 358 PANTHER O-METHYLTRANSFERASE 38 339 IPR016461 GO:0008168
Seca3g09987 358 SUPERFAMILY "Winged helix" DNA-binding domain 18 113 IPR036390 -
Seca3g09987 358 Pfam O-methyltransferase domain 133 340 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09987 Seca-Chr3 243339814 243341765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09987 40 344 Monolignol Biosynthesis Gene Families AT5G54160 38.730 7.74e-71 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09987 K22588 - gmx:100782951 489.574