Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09980 ATGAGAACTTTTCCCTTAAACTTCCCTTGTGCTGTACAAGGAACTATATTTTCTCAAAGGAAACAAGTAACTCAGGGATGCACAAATCAGAAATCAAAGGATTACCTAGTGCAGGATGGCTGTATATTACATTCTGAGAATGCATTAAGGAGGAAACTTATCCTCTCTGTTTTGGTCTCAACTGGTGTTTTTCCAACTTTATCTTCTTATGGGAAGACAAAGGGCTCGAATCCATATAATGAAAAACGCTTGCTACAACAAAATAGGCAGAGACAGAAAGAAAACAATGCACCAGAGGACTTCCCAAATTTTATTAGAGAAGGTTTTACAGTCAGAGTGATATCATCAGATAACTATATAAAGCGTGATTCAGGACTCATATACCGAGATTTTGAAGTTGGTAAAGGTGATTGCCCAAAGGATGGTCAGCAGGTCATATTTCACTATATTGGCTATAACGAATCTGGCCGTCGTATTGACAGCACTTATTTGCAGGGTTCTCCTGCCAAAATTCGCATGGGTACTAAGGCATTGGTTCCAGGATTTGAAGAAGGAATTAGAGACATGAGGCCAGGTGGAAAGAGAAGAATCATTATTCCCCCTGAACTTGGACCGCCGGTAGGACCTTCAACCTTTTTCAGCTCAAAACAGTTTGAAGTTTTTGATGTTGAATTATTAAGCATACAAAACTGCGAAAGAAGGACCATAGCCTTTTACTCTGATGTCGTATGCAATTGA 738 0.3943 MRTFPLNFPCAVQGTIFSQRKQVTQGCTNQKSKDYLVQDGCILHSENALRRKLILSVLVSTGVFPTLSSYGKTKGSNPYNEKRLLQQNRQRQKENNAPEDFPNFIREGFTVRVISSDNYIKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPAKIRMGTKALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSIQNCERRTIAFYSDVVCN. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09980 245 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 139 225 IPR001179 GO:0003755
Seca3g09980 245 SUPERFAMILY FKBP-like 95 229 - -
Seca3g09980 245 Gene3D - 83 237 IPR046357 GO:0003755
Seca3g09980 245 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 142 229 IPR001179 GO:0003755
Seca3g09980 245 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP20-2, CHLOROPLASTIC 7 245 IPR044239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09980 Seca-Chr3 243231406 243235863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09980 132 231 Calmodulin-binding Proteins AT5G48570 33.333 5.54e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09980 - - gmx:100305486 438.343