Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09977 ATGGGTGAGAAAGACGATGGTTTGAATTTGGGTTTGAGCTTGAGCTTAGGATGTGGAGAAAATGCAAGTAATAGTAATAATAATCAACCTCCTTTGAAGATGAGTCTCATGCACAAGCCTCCTCAATCGTTTCCAAACCAAAGGCCTTCCTTCAATAGCTTATTCCATTTTCATGATCGGAGCTCCGAGACGAGGTCGTTTCTCCGCGGAATGGACATGAACTCACCGCGGCCGGCGGCGGCCGCGTTCGACGACGAAAACGGAGTTTCATCGCCGAACAGCACCGTTTCGAGCATCAGTGGGAAGCGGAGCGAGAGAGAGGGTAACGGAGACGAGAACGATGCTGCTGAGAGGACCTCGTGTTCTCGGGGAGGAAGCGACGATGATGACGGCGGCGGTGATGGCGGCGATGGTGACGGCGACACTTCAAGGAAGAAGCTGAGGTTGTCTAAGGAACAGTCCTTGGTGCTGGAAGAAACCTTCAAGGAGCACAATACCCTGAATCCGAAACAAAAACAAGCATTGGCAAAGCAGCTGAATCTGAGGCCTAGACAGGTTGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACTGAAGTGGATTGTGAATACTTGAAGAGATGCTGTGAGACTCTAACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTTCAAGAGCTTAGGGCATTGAAATTATCCCCACAGCTCTACATGCACATGAACCCTCCCACCACTCTTACAATGTGCCCTTCATGTGAGCGTGTTGCTGTCTCATCTACATCCTCCTCATCCGCCGCCACGCCCTCTGCCCCGGCACCGACTAATCGCAGCCCAATGAGCCCGAGCATCCAGCGGCCGGTACCTGTCAACCCTTGGGCGGCAATGTCTATCCAACACCACCGTCCCCGGCCATAA 924 0.5184 MGEKDDGLNLGLSLSLGCGENASNSNNNQPPLKMSLMHKPPQSFPNQRPSFNSLFHFHDRSSETRSFLRGMDMNSPRPAAAAFDDENGVSSPNSTVSSISGKRSEREGNGDENDAAERTSCSRGGSDDDDGGGDGGDGDGDTSRKKLRLSKEQSLVLEETFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSTSSSSAATPSAPAPTNRSPMSPSIQRPVPVNPWAAMSIQHHRPRP. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09977 307 Coils Coil 206 236 - -
Seca3g09977 307 MobiDBLite consensus disorder prediction 263 307 - -
Seca3g09977 307 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 279 - -
Seca3g09977 307 Pfam Homeodomain 144 198 IPR001356 GO:0003677
Seca3g09977 307 Gene3D - 136 205 - -
Seca3g09977 307 ProSiteProfiles 'Homeobox' domain profile. 140 200 IPR001356 GO:0003677
Seca3g09977 307 SMART halz 200 243 IPR003106 GO:0006355|GO:0043565
Seca3g09977 307 FunFam Homeobox-leucine zipper protein 18 128 205 - -
Seca3g09977 307 SMART HOX_1 142 204 IPR001356 GO:0003677
Seca3g09977 307 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Seca3g09977 307 MobiDBLite consensus disorder prediction 16 33 - -
Seca3g09977 307 MobiDBLite consensus disorder prediction 87 103 - -
Seca3g09977 307 MobiDBLite consensus disorder prediction 263 286 - -
Seca3g09977 307 Pfam Homeobox associated leucine zipper 200 234 IPR003106 GO:0006355|GO:0043565
Seca3g09977 307 Pfam HD-ZIP protein N terminus 1 107 IPR006712 GO:0005634
Seca3g09977 307 CDD homeodomain 144 201 IPR001356 GO:0003677
Seca3g09977 307 MobiDBLite consensus disorder prediction 40 57 - -
Seca3g09977 307 SUPERFAMILY Homeodomain-like 129 201 IPR009057 -
Seca3g09977 307 MobiDBLite consensus disorder prediction 1 146 - -
Seca3g09977 307 MobiDBLite consensus disorder prediction 104 130 - -
Seca3g09977 307 ProSitePatterns 'Homeobox' domain signature. 175 198 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09977 Seca-Chr3 243215724 243219048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09977 41 307 Homeobox Transcription Factor Family AT3G60390 63.571 1.39e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca3g09977 HD-ZIP_N 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09977 K09338 - gmx:100798480 420.624