Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09976 ATGAGAATGATGTTGTTCACCCGCCATCTATTTAGCAGCAGCTGCGCCTCAAAGATTTCAAAAATCCCTTCAAGGTACAAGAAGGTTTCCGTTTCACAAGCTCAACAAGTCCTCACTGACTACCTCCACGCCACGAGGTGCCTCCCTTATGCCTTCGCTGATCAGATTGCCAAGAACTCCTTTCTCTCCCTTTCCAATCTCATTGCCAAGTTGGGATCTTTTTCCCCTTCAACTTTCTCCAGGACCTTTGACAAGTTCCTCAGGTACAATCCCATCAATGAATTTGAGTTTTTCTTTGAAAGCATTGGCATTCACCACACCCACCTCCCTGCCTTGTTGCCCCACAATAAGTTCTTCTTTTCTGAAGACGGGTCACTTCTGGATGCTGCTTGTGCACTCTCTGAATTTGGGTTTCCGTGGGATAGGCTTGGTTTGCTGTATATGGAGAGTAGTTCTGTGTTCAGTATGAGTGCTTCTGACTTGAAGGGCAGGCTTTATGGGTTCAAAAGATATGGTTTTTCTAATGTCCAAGTCGTTGGGATATGTTTTGCTTTCCCTTTTGTTTTTGGTGGGGAGGAAGGCCAGTTGGATGCCGAGATTGATGGGTTATTGACTAGTCTGAAGTTGGTTTTTTTGGACTTTGATTTGGCAGGGTCTGTTGAGGGCAATGTGGAGTCTTGGCATGAGGTGTGTAGGAAAATCAAGGTGTTTTATGATTTGAATGGTGACAAGGGTAAGATAGTGGAGCTCATTGGAAGGAATAAAGATGTCATTCTTGAGCATGGAGAAGGGGAGTTGATTAAAAAAATAGAGTATTTTTGTAGGTTTGGTGTCAAGGAGGAGGATGCAGCTCAGTTGATTCTGCAGGGATCAGAATTGGTGAATATTAATTTGGAAACACCGGTGATTAATGTGTTGAAACTGCTGAAACACTTTGGAATGAGCTCCAAAGATCTTGAGAATGTCAGAATGGAGTATGCTCATGTGTTGGGAACAACAAAAATGGCTAATCTGCCCAATATAATGAGGGCTTTGGGTTTACATGAGTGGTTCTTTAATAAAGTCAAGGATGGGAATCATCAGCTGTTAGTTAGTTATATTACAAGCTATCCCAGTGAAGACCATGATGAAGGTTATCAAGTTGGTTTAAAGACAATTCATGTTTCAAGAACCCCAACTCACAATATGAATAAATTAAATTTCCTGCATGCCATAGGCTTTGGGGAAAATGCTGTGACTATGACAATCTTAAGTCACTTGCATGGAAGCAGTAGTGAGTTACAACAAAGATTTGATTGCCTTCTACATTCAGGGATTGAATTCTCAAAGCTCTCTAAGTTGGTTAGAATTCGACCAAAGATTCTAAGCCAAAGCCATGAAATTATAGAGAAAAAGATTAATTTCCTCTGTAAGGAAATGGGAAGCTCCATAGAGCTTTTGGATACTTTTCCAGCATTCCTATGTTTTGACTTAGAGAACCGCATTAAGCCTAGGTACAGATTCCATATGTGGGCTATAGAAAAGGGTCTGTGTACCAAAAACTATTCCATTGCAAGCATGATTGCGACCAGTGACAAGAATTTTGTTGCTCGCACTTTTAAAATTCACCCTGCTGCTCCAAAACATTGGTTTGAGCAATTCTATCTCAGGAAATTGCTAGTATGA 1665 0.4114 MRMMLFTRHLFSSSCASKISKIPSRYKKVSVSQAQQVLTDYLHATRCLPYAFADQIAKNSFLSLSNLIAKLGSFSPSTFSRTFDKFLRYNPINEFEFFFESIGIHHTHLPALLPHNKFFFSEDGSLLDAACALSEFGFPWDRLGLLYMESSSVFSMSASDLKGRLYGFKRYGFSNVQVVGICFAFPFVFGGEEGQLDAEIDGLLTSLKLVFLDFDLAGSVEGNVESWHEVCRKIKVFYDLNGDKGKIVELIGRNKDVILEHGEGELIKKIEYFCRFGVKEEDAAQLILQGSELVNINLETPVINVLKLLKHFGMSSKDLENVRMEYAHVLGTTKMANLPNIMRALGLHEWFFNKVKDGNHQLLVSYITSYPSEDHDEGYQVGLKTIHVSRTPTHNMNKLNFLHAIGFGENAVTMTILSHLHGSSSELQQRFDCLLHSGIEFSKLSKLVRIRPKILSQSHEIIEKKINFLCKEMGSSIELLDTFPAFLCFDLENRIKPRYRFHMWAIEKGLCTKNYSIASMIATSDKNFVARTFKIHPAAPKHWFEQFYLRKLLV. 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09976 554 Pfam mTERF 420 528 IPR003690 GO:0003690|GO:0006355
Seca3g09976 554 Pfam mTERF 229 332 IPR003690 GO:0003690|GO:0006355
Seca3g09976 554 PANTHER CGI-12 PROTEIN-RELATED 89 535 IPR003690 GO:0003690|GO:0006355
Seca3g09976 554 SMART mt_12 248 279 IPR003690 GO:0003690|GO:0006355
Seca3g09976 554 SMART mt_12 144 174 IPR003690 GO:0003690|GO:0006355
Seca3g09976 554 SMART mt_12 445 476 IPR003690 GO:0003690|GO:0006355
Seca3g09976 554 SMART mt_12 284 315 IPR003690 GO:0003690|GO:0006355
Seca3g09976 554 SMART mt_12 477 511 IPR003690 GO:0003690|GO:0006355
Seca3g09976 554 FunFam Transcription termination factor MTEF18, mitochondrial 383 543 - -
Seca3g09976 554 Gene3D Transcription termination factor 3, mitochondrial 291 547 IPR038538 -
Seca3g09976 554 Gene3D Transcription termination factor 3, mitochondrial 68 213 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09976 Seca-Chr3 243169947 243171720 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca3g09976 mTERF 5.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09976 - - gsj:114418754 698.353