Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09957 ATGTTTGGGCGTGGACCAAGGAAGAGTGATAACACCAAATATTATGATATTCTTGGTGTTTCAAAAAGTGCTAATGAAGATGAAATCAAGAAAGCCTATAGAAAGGCAGCAATGAAGAACCATCCAGATAAGGGTGGGGATCCTGAGAAGTTCAAGGAATTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAAAAGAAAGAAGTGTATGACCAATATGGTGAAGACGCCCTTAAAGAAGGGATGGGTGGAGGAGCCTCATTTCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAGGCTTTGGTGGCGGTGGTAGTTCACGAGGTAGAAGACAGAAGCATGGGGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGATGTGTACAATGGGACAACAAGGAAACTGTCTCTTTCTAGAAATGTATTATGCTCAAAATGTAAAGGGTATGGACTTATGTGTTTATATGTTTTCTACATCTGA 495 0.3939 MFGRGPRKSDNTKYYDILGVSKSANEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKKEVYDQYGEDALKEGMGGGASFHNPFDIFESFFGGAGFGGGGSSRGRRQKHGEDVVHSLKVSLEDVYNGTTRKLSLSRNVLCSKCKGYGLMCLYVFYI. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09957 164 CDD DnaJ 14 63 IPR001623 -
Seca3g09957 164 Gene3D - 111 155 - -
Seca3g09957 164 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Seca3g09957 164 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 155 IPR044713 GO:0006457|GO:0030544
Seca3g09957 164 SMART dnaj_3 12 66 IPR001623 -
Seca3g09957 164 Gene3D DnaJ domain 10 110 IPR036869 -
Seca3g09957 164 SUPERFAMILY Chaperone J-domain 9 109 IPR036869 -
Seca3g09957 164 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Seca3g09957 164 FunFam dnaJ protein homolog 10 109 - -
Seca3g09957 164 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 153 IPR008971 GO:0006457|GO:0051082
Seca3g09957 164 Pfam DnaJ domain 13 71 IPR001623 -
Seca3g09957 164 PRINTS DnaJ domain signature 66 85 IPR001623 -
Seca3g09957 164 PRINTS DnaJ domain signature 15 33 IPR001623 -
Seca3g09957 164 PRINTS DnaJ domain signature 46 66 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09957 Seca-Chr3 242846126 242848384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09957 8 78 C2H2 Transcription Factor Family AT1G74250 40.000 1.29e-11 60.1