Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09955 ATGGAAAGTGATGCTGAAGACAACTGCTTTGCCACATCCTCCTCCTCCTCTACTCCCACCAACACTTCTAGCACATCCTCTTCAACATCTCCAACTTCAAATTCAGATTCATGCACCAAGAAGCAAGACTCAAAACCTCCTCTTAATGATTCAACCACATCCCAAAACATGAAAAATGAAAAGGACTCAAAGGAGTGCAAGAAGAGGCAGAGAAGTGAAAGTGATAGCAAGCACCCTACATATAGAGGAGTAAGAATGAGGAATTGGGGAAAGTGGGTATCAGAGATTCGTGAGCCAAGAAAGAAATCAAGAATTTGGCTTGGAACATACCCAACAGCAGAAATGGCAGCTAGAGCTCATGATGTAGCTGCTTTAGCTATCAAAGGCCATTCAGCATACCTCAATTTCCCTGAATTGGCACAAGAACTTCCAAGGCCAGCTACCACATCTCCTAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAAACACTGCCTTTGAGGAGATTAAGTATTGTCAAGATGAAGCTGAACCAAATCAAGCAGAACAGGCTTCATCTTCCACTATATCTATGGATAGTACTCAAGAATCTTCAAATTCTCCTTCTGCCAATGATGATGCAACATTGTTTGACTTACCAGATCTTTTTCCTGATGGAAACCATGGACTTTGCTCCTACTCTTCTTCTTCTTCTTGGCATTTATGTGCTGTGGATAGTGGATTCAGGGTTGAGGAATCATATTTTTGGGAGAACTACTAG 759 0.4229 MESDAEDNCFATSSSSSTPTNTSSTSSSTSPTSNSDSCTKKQDSKPPLNDSTTSQNMKNEKDSKECKKRQRSESDSKHPTYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPRPATTSPKDIQAAAAKAANTAFEEIKYCQDEAEPNQAEQASSSTISMDSTQESSNSPSANDDATLFDLPDLFPDGNHGLCSYSSSSSWHLCAVDSGFRVEESYFWENY. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09955 252 Gene3D AP2/ERF domain 80 138 IPR036955 GO:0003700|GO:0006355
Seca3g09955 252 MobiDBLite consensus disorder prediction 175 209 - -
Seca3g09955 252 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Seca3g09955 252 SMART rav1_2 80 143 IPR001471 GO:0003700|GO:0006355
Seca3g09955 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 51 218 - -
Seca3g09955 252 CDD AP2 81 139 IPR001471 GO:0003700|GO:0006355
Seca3g09955 252 MobiDBLite consensus disorder prediction 1 83 - -
Seca3g09955 252 MobiDBLite consensus disorder prediction 1 56 - -
Seca3g09955 252 Pfam AP2 domain 79 130 IPR001471 GO:0003700|GO:0006355
Seca3g09955 252 MobiDBLite consensus disorder prediction 57 82 - -
Seca3g09955 252 FunFam Ethylene-responsive transcription factor 2 79 138 - -
Seca3g09955 252 MobiDBLite consensus disorder prediction 178 206 - -
Seca3g09955 252 ProSiteProfiles AP2/ERF domain profile. 80 137 IPR001471 GO:0003700|GO:0006355
Seca3g09955 252 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Seca3g09955 252 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09955 Seca-Chr3 242810111 242810869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09955 68 248 AP2-EREBP Transcription Factor Family AT2G44940 55.660 8.02e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g09955 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09955 - - gmx:100801129 347.821