Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09947 ATGTTGGACTACGAATGGGGAAACCCATCCACGATAATGCTCACCGGAAATGAAGACGGCTCCGCCGCTGCCTCCGATCAAACCCACCGTCAAATCTTCGACCACTACAACTGTCACACCCTGTTACCCGACCACTTCCTACATGGGCCTGGGCCCACACACAACAACACCACTACAACCACAGCCTCAAACACCGTGGATTTCACTCAGCACCACCACTTCAACCCACAAGCCCACCACCACCTCCACCACACTTTCTTCGACCCACGCGCCTTCCATGGCGCGTCCTCAACCTCCTACCCTCCGCCCCAACCACCACCTTCCATGCTCTCCCTCGACCCCCTGAACGGGCCCGGGACAGGGCCCGGGCTCCTCCTCGTGCCTAAGTCCGAGGACGTCGGTCGGCCCATGGACTTCGTGGGCTCGAGAATTGGCCTCAACCTGGGAGGCCGCACCTACTTCTCATCCTCTGAAGACGACTTCGTGAGCCGGCTCTACCGCCGGTCCAGGCCCGCTGAACCGGGCTCGACCGCTTCCTCGAACTCGCCGAGGTGCCAGGCCGAAGGATGCAATGCTGATCTGTCACAGGCAAAGCACTACCACCGACGCCACAAGGTGTGCGAGTTTCACTCCAAGGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTTTCTGAGTTTGATAATGGAAAACGTAGCTGCAGGAAGAGACTGGCAGATCATAATCGTCGCAGAAGAAAAACTCAGCAACCAACTCAAGAAATTCAGAAAACTCAGACTAGTTTGGATAATGTTGCAAGATCCCCACCGGACTCTGGAACTCAGTCGTCATCTTCGGTGACGGTGGCAGTGTCGCCGCCGGATTATTTCCGGCAAAGGCCTTACCAAAGCCCAAGCCCATCAACAACATCAAGCTCACTGTTTTTCTCAAGCGGGTAG 972 0.57 MLDYEWGNPSTIMLTGNEDGSAAASDQTHRQIFDHYNCHTLLPDHFLHGPGPTHNNTTTTTASNTVDFTQHHHFNPQAHHHLHHTFFDPRAFHGASSTSYPPPQPPPSMLSLDPLNGPGTGPGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEPGSTASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQEIQKTQTSLDNVARSPPDSGTQSSSSVTVAVSPPDYFRQRPYQSPSPSTTSSSLFFSSG. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09947 323 SUPERFAMILY SBT domain 183 263 IPR036893 GO:0003677|GO:0005634
Seca3g09947 323 ProSiteProfiles Zinc finger SBP-type profile. 182 259 IPR004333 GO:0003677
Seca3g09947 323 MobiDBLite consensus disorder prediction 303 323 - -
Seca3g09947 323 MobiDBLite consensus disorder prediction 263 296 - -
Seca3g09947 323 Pfam SBP domain 185 258 IPR004333 GO:0003677
Seca3g09947 323 Gene3D - 175 246 IPR036893 GO:0003677|GO:0005634
Seca3g09947 323 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 93 315 IPR044817 GO:0003677
Seca3g09947 323 MobiDBLite consensus disorder prediction 248 323 - -
Seca3g09947 323 FunFam Squamosa promoter-binding-like protein 14 176 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09947 Seca-Chr3 242723190 242726054 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09947 1 232 SBP-box Gene Family AT1G02065 45.635 2.00e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca3g09947 SBP 4.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09947 - - gmx:100778566 484.567