Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09945 ATGTTCTGTGATCTTAACAACCATATGAGAGAGGAAAATAACGGAAACAGTAGTTCTATTTGGTACTACTATTCATCACCATGGCAACCCTTACCCACTTCTTCTAACGCATCACACAACACCACCACTGCGGCCGAGACTTCTCACAACCACCACCAGCTACTACCTGATCTGTATGTGGGTGATTGTTCCCACGTGCAGCCTGACCCACATCTCACGTGTTTGTATCTTGGACTTGGTAAGAGGCATTACTTTGAGGACACTACTACTACTGATCATCATAGTACTCCTCATCCGGGGGAGCGACACGTGTGCGGTGCTGATGGGTTTGGCTTAAAGGGAAATAATAATAATAATAAGAGAGCCAGACCCTTCTATGGCGAGAAGGCGACGGCGATGGTTCCTAGATGTCAGGTGGAGGGGTGCCACGTGGCACTGTTGAACGCGAAGGAGTACCACAGGAGGCACAAAGTTTGTGATATGCATTCCAAGGCACCCAAAGTTGTGGTGTTAGGGTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGACGATTCAAAGAGGAGTTGTAGGAGAAGACTAGCGGGCCATAATCAGCGAAGGAGAAAGACCTCTCATTCTCATTCTCTTACTGAAGGAAATTCTAGTCAAGGGTGTTCTCTCTCTTCTGTCATGTGGGAGTGA 705 0.4752 MFCDLNNHMREENNGNSSSIWYYYSSPWQPLPTSSNASHNTTTAAETSHNHHQLLPDLYVGDCSHVQPDPHLTCLYLGLGKRHYFEDTTTTDHHSTPHPGERHVCGADGFGLKGNNNNNKRARPFYGEKATAMVPRCQVEGCHVALLNAKEYHRRHKVCDMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNQRRRKTSHSHSLTEGNSSQGCSLSSVMWE. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09945 234 MobiDBLite consensus disorder prediction 201 234 - -
Seca3g09945 234 Pfam SBP domain 137 210 IPR004333 GO:0003677
Seca3g09945 234 ProSiteProfiles Zinc finger SBP-type profile. 134 211 IPR004333 GO:0003677
Seca3g09945 234 FunFam Squamosa promoter-binding-like protein 14 128 198 - -
Seca3g09945 234 SUPERFAMILY SBT domain 135 215 IPR036893 GO:0003677|GO:0005634
Seca3g09945 234 Gene3D - 128 198 IPR036893 GO:0003677|GO:0005634
Seca3g09945 234 MobiDBLite consensus disorder prediction 216 234 - -
Seca3g09945 234 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 216 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09945 Seca-Chr3 242659317 242663699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09945 134 210 SBP-box Gene Family AT2G42200 72.727 3.07e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca3g09945 SBP 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09945 - - gmx:100780159 242.276