Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09929 ATGGCTTCTGCGGTCTTATACTTGCATGAAGGGTGGGAAGCCAAAATAGTGCATAGGGACATTAAGGCTAGCAATGTGTTGTTGGATAAGGATATGAATGAAAGGCTTGGAGATTTTGGGTTAGACAGAATGCACAGCCATTGTCAAATTTCTAGCACCGCAAAATTGGTTGGATCGGAACAGTTGGGTACATGGCTCCTGAAGTGA 207 0.4396 MASAVLYLHEGWEAKIVHRDIKASNVLLDKDMNERLGDFGLDRMHSHCQISSTAKLVGSEQLGTWLLK. 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09929 68 ProSiteProfiles Protein kinase domain profile. 1 68 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09929 68 ProSitePatterns Serine/Threonine protein kinases active-site signature. 16 28 IPR008271 GO:0004672|GO:0006468
Seca3g09929 68 Gene3D Transferase(Phosphotransferase) domain 1 1 63 - -
Seca3g09929 68 PANTHER - 1 58 - -
Seca3g09929 68 SUPERFAMILY Protein kinase-like (PK-like) 1 55 IPR011009 -
Seca3g09929 68 Pfam Protein kinase domain 2 49 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09929 Seca-Chr3 242384331 242384537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09929 1 59 Receptor kinase-like Gene Family AT4G04960 64.407 1.02e-22 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca3g09929 Pkinase 3.4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09929 - - gmx:100794861 103.605