Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09920 ATGGCAGTCACATTCTACGACCTTAGCTCTGATTTTGGGTTGAAAAAGCTTGATGAGTACCTTCTCACCCGCAGTTATATCACTGGTTACCAAGCTTCAAAGGATGATGTTACCGTATATGCAGCTTTGCCAAAGGTTCCATCAGATGAATATGTGAATGTGTCCAGGTGGTACAAGCACATTGACGCTTTGTTGAGAATATCTGGTGTTTCTGGTGAGGGATCTGGTATCACTGTGGAGGGATCTTCTCTCGTGGGAGAGGCTGTTGCCACCCCCCCAGCTGCTGACACAAAGGCAACTGCAGCTGAGGATGATGATGATGATGATGTGGATTTGTTTGGGGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAAGAACGGGCAGCTGCTGTGAAGGCGGCTGGAAAAAAGAAAGAGTCTGGGAAATCATCTGTTCTGTTGGATGTGAAGCCATGGGATGATGAAACTGACATGAAAAAACTTGAAGAAGCAGTGAGATCTGTTCAGATGGAAGGGTTACTTTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGTATCAAGAAACTCCAAATTATGCTTACTATTGTGGATGATCTAGTCTCTGTCGACAATCTTATTGAGGAATATCTTACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATAA 696 0.444 MAVTFYDLSSDFGLKKLDEYLLTRSYITGYQASKDDVTVYAALPKVPSDEYVNVSRWYKHIDALLRISGVSGEGSGITVEGSSLVGEAVATPPAADTKATAAEDDDDDDVDLFGEETEEEKKAAEERAAAVKAAGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEYLTVEPINEYVQSCDIVAFNKI. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09920 231 FunFam Elongation factor 1-beta 1 like 136 231 - -
Seca3g09920 231 Gene3D - 135 231 IPR014717 -
Seca3g09920 231 FunFam Elongation factor 1-delta 1 3 78 - -
Seca3g09920 231 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 9 231 - -
Seca3g09920 231 SUPERFAMILY eEF-1beta-like 139 231 IPR036219 -
Seca3g09920 231 CDD EF1B 140 231 IPR014038 GO:0003746|GO:0006414
Seca3g09920 231 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 220 231 IPR001326 GO:0003746|GO:0005853|GO:0006414
Seca3g09920 231 Gene3D - 4 76 - -
Seca3g09920 231 MobiDBLite consensus disorder prediction 91 110 - -
Seca3g09920 231 Pfam EF-1 guanine nucleotide exchange domain 144 231 IPR014038 GO:0003746|GO:0006414
Seca3g09920 231 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 106 114 IPR001326 GO:0003746|GO:0005853|GO:0006414
Seca3g09920 231 Coils Coil 114 134 - -
Seca3g09920 231 SMART EF1_GNE_2 142 231 IPR014038 GO:0003746|GO:0006414
Seca3g09920 231 SUPERFAMILY GST C-terminal domain-like 13 67 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09920 Seca-Chr3 242277968 242280782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09920 5 231 Eukaryotic Initiation Factors Gene Family AT2G18110 82.456 8.09e-118 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09920 K03232 - gmx:100777627 332.413