Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09919 ATGGACATGTACGGTTCCTTTTCTAACTCTTCAGATTGTTTACGCATTGATGATTTTTCAGATTTCTCCAACCATTCCTTCACCGCCACCGATTCTCACCACCTTCCTCCGCCGCAGCGCCCTTTCACCGATCAATTCTCCGATGACCCCAATTTCTTCATCAATTTCCCTTCCATCCCCAGCGACGAAGCAGCAGAGCTCGAATGGCTCTCCCAATTCGTCGACGACACGACATCGTTTCACGATTTCCCGGCGAGCCACATTATGCCCATGGAATCCCACACGACGTCGTTTCTCAAGAATAATATTAATATTAATAATGCTACAAATAATAATAATAGTAGTAGTAATAAGAATAGCTACAGTAATAATCCCAAATCATCAGAGGTAATTCCTCCGTCGTCGTCGGTGGCCGGAAAATCGAGATCGAAGAGGGAGGGGAATGGAGGGTCACCGGCCGGAGAGGGAGGGGTTAGGAGGTGTAGCCACTGCGCATCAGAGAAAACACCTCAATGGAGAACGGGACCACAGGGTCCGAAGACGCTTTGCAATGCGTGTGGTGTGAGGTTCAAATCGGGTCGGCTCGTGCCCGAATACCGACCCGCAGCGAGTCCCACATTCGTGCTGACTCAGCACTCCAACTCTCACCGGAAAGTCATGGAGCTCCGTCGCCAGAAGGAGCTGCTCCGCCAACAACAACAGCAGCAACAACAGCAAGAGCAATGCTACCGTCACATGCATGATTTCAAAGTTTGCTGA 759 0.5007 MDMYGSFSNSSDCLRIDDFSDFSNHSFTATDSHHLPPPQRPFTDQFSDDPNFFINFPSIPSDEAAELEWLSQFVDDTTSFHDFPASHIMPMESHTTSFLKNNININNATNNNNSSSNKNSYSNNPKSSEVIPPSSSVAGKSRSKREGNGGSPAGEGGVRRCSHCASEKTPQWRTGPQGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQKELLRQQQQQQQQQEQCYRHMHDFKVC. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09919 252 ProSiteProfiles GATA-type zinc finger domain profile. 159 191 IPR000679 GO:0006355|GO:0043565
Seca3g09919 252 SMART GATA_3 155 205 IPR000679 GO:0006355|GO:0043565
Seca3g09919 252 FunFam GATA transcription factor 152 238 - -
Seca3g09919 252 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 159 219 - -
Seca3g09919 252 Gene3D - 158 245 IPR013088 GO:0006355|GO:0008270
Seca3g09919 252 MobiDBLite consensus disorder prediction 104 142 - -
Seca3g09919 252 CDD ZnF_GATA 160 207 IPR000679 GO:0006355|GO:0043565
Seca3g09919 252 PANTHER GATA TRANSCRIPTION FACTOR 138 238 - -
Seca3g09919 252 Pfam GATA zinc finger 161 194 IPR000679 GO:0006355|GO:0043565
Seca3g09919 252 ProSitePatterns GATA-type zinc finger domain. 161 186 IPR000679 GO:0006355|GO:0043565
Seca3g09919 252 MobiDBLite consensus disorder prediction 104 161 - -
Seca3g09919 252 Coils Coil 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09919 Seca-Chr3 242267403 242269073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09919 35 236 C2C2-Gata Transcription Factor Family AT2G45050 52.727 3.21e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca3g09919 GATA 3.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09919 - - gmx:100782863 285.419