Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09909 ATGTGGTCATCAGCAGAGTCTAGAGCATTTAGTTCTGAAATTCAAACACTAGGTTCAATCAAACACAAGAATATCATCAAGCTTCTAGGTTGTGGATCCAGTAAAAATTTGAAGCTGCTGTTTTATAACTACCTCCCTAATGGAAGTCTAAGATCATTATTTCAGGGTTCAGGAAAGGCAAAAGTAGAATGGGAGACCATATATGAAATCATGCTAGGCCTAGCTCACGCACTTGCATATTTACACCATGATTGTGTGCCTTCTATATTGCATGGAGATGTCAAAGCAATGAATGTGTTATTAGTTCCTGGCTATCACCCTTATCTTGCTAACTTTGGCCTTGCAAGAATTGCAAGTGAAAATGGTGATACTGATAATACTAATTCCAAGCAAATTCAAATACTAATTCCTGGCTTCTATATTGCCTTCTACTATGCATGA 441 0.3741 MWSSAESRAFSSEIQTLGSIKHKNIIKLLGCGSSKNLKLLFYNYLPNGSLRSLFQGSGKAKVEWETIYEIMLGLAHALAYLHHDCVPSILHGDVKAMNVLLVPGYHPYLANFGLARIASENGDTDNTNSKQIQILIPGFYIAFYYA. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09909 146 ProSiteProfiles Protein kinase domain profile. 1 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09909 146 Pfam Protein tyrosine and serine/threonine kinase 5 132 IPR001245 GO:0004672|GO:0006468
Seca3g09909 146 SUPERFAMILY Protein kinase-like (PK-like) 7 125 IPR011009 -
Seca3g09909 146 Gene3D Transferase(Phosphotransferase) domain 1 2 143 - -
Seca3g09909 146 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 126 - -
Seca3g09909 146 ProSitePatterns Serine/Threonine protein kinases active-site signature. 89 101 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09909 Seca-Chr3 242128178 242128618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09909 1 130 Receptor kinase-like Gene Family AT5G56040 65.152 3.46e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca3g09909 PK_Tyr_Ser-Thr 3.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09909 - - gmx:100813139 210.305