Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09907 ATGGAGGAAGAACTTAGAATTAAGGCAATCGAGGAACTTGTGAGAGGGCGTGAGATTGCTAACCATCTTAGACAAGTCATTAATAGTGAAAATGATGAATCATTTGCCCAACATCTTGTTAACAACATGCTCCGTTCATTTACCAATACCCTATTCCTCTTGGATAAATTTGAATCCCAAGAGGTTTCTCAGATCCACCAACAAATTAGAGACTCTTCTTCTGACTCTCAAGAAAGTTATTGCAAGAGTAGTTCTACTTCTACAGCCGGTAAGGACAGAAGAGGGTGCTATAAGAGAAGAAAAACAACACAAACATGGGAGAAGGTGACAGAAATTCCAGTTGATGATTGCCATCAATGGAGAAAGTATGGTCAAAAGGAGATTCTCAATAACAAATATCCAAGGAACTATTACAGATGCACTCACAAATTTGATCAGAGATGCCAAGCAACCAAACAGGTGCAGAGAATTCAAGAGGAGCCTCCTTTGTATAAGACAACCTATTATGGCCACCACACTTGCAAAAACATACTAAACCCTGCTGAGATCATACTTGATCCTACTTCTCCTCCTAATACTATATTGCTTAGCTTTAACAACACTTTCCCAACTCCAACTAAACAAGAGTGCCCCTTCTTATCCTCATCTTTTCCCTCACCACCACCACCACCTGTGAACAAGGAGTGTAAGGAGGAGCCTCCCTCATCTTCCTTAGATGATTACCTGCTCCCTCCACAGCCAACTTTGGATGATTCTTCAAGGCATAATGTCACTCTTGAATCTGACCACAGCTGGGATGTGATGTTGTATGATTCTATTGAGCTTGATGATGTCTTTCAGTCTTTTGTTGGATTTTGGTGA 861 0.4077 MEEELRIKAIEELVRGREIANHLRQVINSENDESFAQHLVNNMLRSFTNTLFLLDKFESQEVSQIHQQIRDSSSDSQESYCKSSSTSTAGKDRRGCYKRRKTTQTWEKVTEIPVDDCHQWRKYGQKEILNNKYPRNYYRCTHKFDQRCQATKQVQRIQEEPPLYKTTYYGHHTCKNILNPAEIILDPTSPPNTILLSFNNTFPTPTKQECPFLSSSFPSPPPPPVNKECKEEPPSSSLDDYLLPPQPTLDDSSRHNVTLESDHSWDVMLYDSIELDDVFQSFVGFW. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09907 286 MobiDBLite consensus disorder prediction 68 97 - -
Seca3g09907 286 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 194 IPR044810 GO:0003700
Seca3g09907 286 MobiDBLite consensus disorder prediction 68 91 - -
Seca3g09907 286 SUPERFAMILY WRKY DNA-binding domain 109 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g09907 286 Pfam WRKY DNA -binding domain 115 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g09907 286 ProSiteProfiles WRKY domain profile. 115 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g09907 286 MobiDBLite consensus disorder prediction 215 229 - -
Seca3g09907 286 SMART WRKY_cls 114 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g09907 286 MobiDBLite consensus disorder prediction 215 256 - -
Seca3g09907 286 Gene3D WRKY domain 98 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09907 Seca-Chr3 242106975 242109129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09907 6 174 WRKY Transcription Factor Family AT3G56400 40.000 1.55e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g09907 WRKY 6.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09907 - - aprc:113861812 309.301