Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09906 ATGCCCCACGTTGGGGGGTCGTGGAGTGCAATGGAACAAAATACCCCTTCTGTTAGTGTTCCCCCCTTTGATATATCTGCATCTCGAGGGCAGAGGATTCGTCCCAAAAGTATGCAATTTGATGATAATATCTTCTTACGTGACGATGATGTAAGGTTGATATATGTCAATGATCCCATCAAGACCAATGAAATGTATGAGTTCTGTGGGAATGAGATTCGAACCAGCAAATACACTCTTGTCACCTTCTTGCCCAAGAATCTGTTCATTCAGTTTCACCGGGTTGCTTATCTCTATTTCCTTGCTATTGCTGCCCTCAATCAGCTTCCTCCCCTGGCTGTCTTCGGGCGAACTGTGTCTCTTTTCCCCCTCTTGTTTGTGCTTTGTGTCACTGCGGTTAAGGATGCCTATGAGGATTGGCGCAGGCACAGGTCAGATCGCAATGAAAACCACAGAGAGTCACTCGTGCTTCAATCTGCTCAGTTCCGGCCCAAGACATGGAAAAGATTACAAGCTGGTGATGTTGTTAAACTCTTTGCTGATGAGATGATTCCTGCTGACATGGTCTTGTTGGGGACAAGTGATCAAAGTGGGATTGCCTATATTCAGACAATGAATTTGGATGGAGAATCGAATTTGAAGACAAGATTTGCTAGGCAGGAAACAGCTTCAGCAGTATTGCCAGAAGCTTGTTCTGTCTCTGGAATTATTAGATGTGAGCAACCTAACCGGAATATTTATGAGTTCAATGCCAACATGGAGTTCAATGGGCATAAGTTTCCCCTTAACCAGTCAAACATTGTACTGCGTGGTTGCCAGCTGAAGAACACAGATTGGATAATTGGTGTTGTGGTTTATGCAGGACAGGAAACAAAAGCAATGATGAACAGTGCAGTTTCCCCTTCCAAGAGAAGCAAACTGGAAAGTTACATGAATAGAGAAACCTTTTGGTTGTCGGTTTTTCTTTTTATCATGTGTTCAGTTGTGGCCCTTGGGATGGGTCTCTGGCTGGTACGCCACAAGAACCAGCTTGATACCTTGCCTTACTACAGAAAAACGTACTTTAACGATGGGCCAGATAAAGGAAAGAAATATAAATATTATGGGATACCGATGGAAACTTTCTTCTCCTTTCTGAGTTCTATCATAGTATTTCAGATAATGATACCGATATCCCTTTACATCACAATGGAGTTGGTTCGATTGGGTCAGTCATACTTCATGATTGAAGACGGGGATATGTATGATGCTAACACTGGATCAAGGTTCCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGCTATGTGTTTTCAGACAAGACAGGAACACTAACGGAAAACAAAATGGAATTCCGGAGAGCTAGTGTACATGGGAAGAACTATGGGAACTCCTTGCTTTTGTCTAATAATAATACAGCAGCTGTTGGTGGTAAACGTAGATGGAAGCTCAAGTCTGAAATTGCAGTTGATTCTGAATTAATGGCATTGTTGCAGAAAGACCGAAATACAGATGAAATAATTGCTGCTCATGAGTTTTTCCTTACATTGGCTGGTTGTAATACTGTGATCCCTATTCTCAGTAGCAATAGGTTTTCCAGTTGTGGAACAAGTGAATCAAATGAAGATATACAGAGTATTGATTATCAGGGAGAATCTCCTGATGAACAAGCCCTAGTTTCTGCTGCCTCTGCATATGGATATACTCTTTTTGAGCGAACATCTGGACATATTGTTATTGATGTCAATGGTGAGAAACTCAGGTTGGATGTATTGGGCCTGCATGAGTTTGATAGTGTGCGAAAGAGGATGTCCGTTGTTATCCGGTTTCCTGACAATGTCGTAAAGGTGTTAGTTAAAGGCGCTGATACTTCAATGTTAAGCATTTTAGCAAATGACAATGCAAGCAACATTAGCATACGGCATACAACTCAGAGTCACTTGAGTGAATATTCTTTGCAAGGGTTACGAACTCTTGTACTTGCCTCCAGGGATCTTTCAGATGCAGAACTTGAGAAGTGGCAAAGAATGTATGAAGATGCAAGCACTTCATTGACTGACCGAGCTGCAAAACTACGTCAAACAGCAGCTCTTATAGAATGCAACTTAAAGCTACTCGGAGCAACTGCTATTGAGGACAAGCTTCAAGAGGGTGTACCAGAAGCCATTGAGTCCCTGCGGCAAGCTGGAATTAAGGTCTGGGTTCTTACTGGGGATAAGCAAGAGACCGCAATTTCAATTGGTCTTTCCTGCAAACTCCTGACTGCAGATATGCAGCAGATAATTATAAATGGCACTTCAGAGGTTGAATGCAGAAATCTCTTGGCAGATGCTAAAGCCAAATATGGTGTGAGATCTTCATATAACGGACATGAGAATCTGAAGCACAAAACCAGTGCTAGACATGATGATGGTCCTGATATTCCCAATGATACGAAGTCATTGGGCATGCCCAAGTGGAATCCAGGAAAGGAAGAAGGAATTACTGCTCCACTGGCACTCATAATTGATGGAACCAGTTTGGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGGCAAGACTTTTCGACCTTGCAACTTCCTGTAGGGTTGTGCTATGCTGCCGTGTTGCACCCTTGCAAAAAGCAGGAATTGTTGATTTGATAAAGAGCCATACAGATGATATGACATTAGCTATCGGTGATGGGGCCAATGATGTGTCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCTATGGGTCAATTTCGGTTCTTGAAAAAATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTATACAACTTCTACCGCAATGCTGTCTTTGTCTTGATGCTATTCTGGTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTGACAGATTGGAGTAGTGTTTTCTATTCTGTGATATACACATCTATCCCTACTATGATTGTTGGTATTCTGGACAAAGACTTGAGTCATAGGACACTCTTGCAGTATCCAAAACTGTATGCTGCAGGTCACCGGCAAGAGGCTTACAATATGCAATTATTTTGGATCACAATGATTGACACACTATGGCAGAGCCTTGTTCTCTTCTATATTCCCTTATTCACCTATAAGGACAGCTCAATCGATATATGGAGCATGGGCAGTTTGTGGACAATTTCAGTTGTTATCCTTGTAAATGTACACCTGGCTATGGACATCAACCGTTGGGTATTAATTACTCATGCTGCAATATGGGGATCAATAATCATTACATATGGTTGCATGGTGGTATTGGATTCTATACCTGTCTTTCCCAATTACTGGACTATTTATCATTTGGCTATGTCCCCTACATATTGGATAACGATTTTGCTTATAATAGTTGTGGCACTGCTCCCTCGCTTTACATACAAAGTTGTTCATCAAATTGTTTGGCCATCAGATATCCAGATAGCTAGAGAAGCTGAGGCAATGAGAAAACAACATGATGATTTGCAGTCAAGGCAACAAGTTTCCAATTAA 3573 0.4162 MPHVGGSWSAMEQNTPSVSVPPFDISASRGQRIRPKSMQFDDNIFLRDDDVRLIYVNDPIKTNEMYEFCGNEIRTSKYTLVTFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAVKDAYEDWRRHRSDRNENHRESLVLQSAQFRPKTWKRLQAGDVVKLFADEMIPADMVLLGTSDQSGIAYIQTMNLDGESNLKTRFARQETASAVLPEACSVSGIIRCEQPNRNIYEFNANMEFNGHKFPLNQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMMNSAVSPSKRSKLESYMNRETFWLSVFLFIMCSVVALGMGLWLVRHKNQLDTLPYYRKTYFNDGPDKGKKYKYYGIPMETFFSFLSSIIVFQIMIPISLYITMELVRLGQSYFMIEDGDMYDANTGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFRRASVHGKNYGNSLLLSNNNTAAVGGKRRWKLKSEIAVDSELMALLQKDRNTDEIIAAHEFFLTLAGCNTVIPILSSNRFSSCGTSESNEDIQSIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNVVKVLVKGADTSMLSILANDNASNISIRHTTQSHLSEYSLQGLRTLVLASRDLSDAELEKWQRMYEDASTSLTDRAAKLRQTAALIECNLKLLGATAIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLTADMQQIIINGTSEVECRNLLADAKAKYGVRSSYNGHENLKHKTSARHDDGPDIPNDTKSLGMPKWNPGKEEGITAPLALIIDGTSLVYILEKELESEARLFDLATSCRVVLCCRVAPLQKAGIVDLIKSHTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKKLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTMIVGILDKDLSHRTLLQYPKLYAAGHRQEAYNMQLFWITMIDTLWQSLVLFYIPLFTYKDSSIDIWSMGSLWTISVVILVNVHLAMDINRWVLITHAAIWGSIIITYGCMVVLDSIPVFPNYWTIYHLAMSPTYWITILLIIVVALLPRFTYKVVHQIVWPSDIQIAREAEAMRKQHDDLQSRQQVSN. 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09906 1190 Pfam Cation transport ATPase (P-type) 542 630 - -
Seca3g09906 1190 Gene3D - 706 936 IPR023214 -
Seca3g09906 1190 SFLD p-type atpase 425 947 IPR044492 -
Seca3g09906 1190 Gene3D - 125 298 - -
Seca3g09906 1190 SUPERFAMILY Calcium ATPase, transduction domain A 153 294 IPR008250 -
Seca3g09906 1190 SUPERFAMILY Calcium ATPase, transmembrane domain M 68 1162 IPR023298 -
Seca3g09906 1190 SFLD C1.7: P-type atpase like 425 947 - -
Seca3g09906 1190 Gene3D - 549 685 IPR023299 GO:0000166
Seca3g09906 1190 MobiDBLite consensus disorder prediction 8 23 - -
Seca3g09906 1190 Pfam Phospholipid-translocating P-type ATPase C-terminal 924 1164 IPR032630 -
Seca3g09906 1190 NCBIfam phospholipid-translocating P-type ATPase 68 1171 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca3g09906 1190 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g09906 1190 NCBIfam HAD-IC family P-type ATPase 705 757 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g09906 1190 NCBIfam HAD-IC family P-type ATPase 866 982 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g09906 1190 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 448 673 IPR023299 GO:0000166
Seca3g09906 1190 Pfam Phospholipid-translocating ATPase N-terminal 54 119 IPR032631 -
Seca3g09906 1190 PRINTS P-type cation-transporting ATPase superfamily signature 441 455 - -
Seca3g09906 1190 PRINTS P-type cation-transporting ATPase superfamily signature 896 915 - -
Seca3g09906 1190 MobiDBLite consensus disorder prediction 796 819 - -
Seca3g09906 1190 Pfam E1-E2 ATPase 155 399 - -
Seca3g09906 1190 CDD P-type_ATPase_APLT_Dnf-like 70 1056 - -
Seca3g09906 1190 ProSitePatterns E1-E2 ATPases phosphorylation site. 443 449 IPR018303 -
Seca3g09906 1190 FunFam Phospholipid-transporting ATPase 708 936 - -
Seca3g09906 1190 SUPERFAMILY HAD-like 436 942 IPR036412 -
Seca3g09906 1190 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 53 1177 - -
Seca3g09906 1190 FunFam Phospholipid-transporting ATPase 126 296 - -
Seca3g09906 1190 MobiDBLite consensus disorder prediction 796 812 - -
Seca3g09906 1190 FunFam Phospholipid-transporting ATPase 552 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09906 Seca-Chr3 242092359 242101672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09906 4 1175 Primary Pumps ATPases AT5G04930 54.953 0.0 1306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09906 K14802 - gmx:100788740 2005.72