Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09905 ATGAATGCCATGGCTTCTCTGCTTCCTCCAACTGCAACTGCAACTGCAACCACTACAATTCAACATAATCAAATGACAATCTGCTTCTCTCCCCTGAAACCCACCACCCCAAATAATGTTTCTTTCTTAACAAACCGTTTCAAGAGCAACCCTGCAAAGTGTAATGCATTGTTTGATAGTGTGGCCAAGGGTTTGTTGGAGAACACTGTTAGTCTGGACCAGTTTCCTAGTCTCCAATCAGGATTAGTGCAATTTCAGAGAGTAACTGAAGACTTGTCAGACATTCAGAGGTGGGGGTTCCTCATTTTTGGTGGGCTCATATGGATTTACTTAACTGCAAGGCCAGGTGTTCTTATTGGTGCCATTGATGCATACCTTCTGGCTCCTATTCAACTGGGTTTGGACAATCTATCTGGAAGGAGAAACTTGAAGAGGAGTGATTTTCTGGTTGGAGATAAGCTTGGTGAAGGGTCATTTGGTGTTGTTTATTCAGGTGTTTTGGCTTCAAAGAATGTGGATGTAGAAGAGAGGGTGCAGAAGAGGGGAAGAGGCAAGGCAACAACACAGTTGGATGTGAAATCAAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTTGGAATCCAAGGGGCTGAAGAATTTGGTGATTTTGAGGAGTGGTTCAACTACAGGCTATCTAGAGCAGCACCTGAAACATGTGCTGAGTTCCTTGGAAGTTTTGTAGCTGATAAAACAAATTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGACCGTACTCTTGCTGATTACATGAAAGATCGCAACTTTCCTTCAAACTTAGAATCTGTCATGTTTGGACGTGTGTTGCAAGGTGTAGACTCTTCTAAACGAAATGCATTGATCATCAAGCAAATAATGCGCCAGATCATTACTTCTCTTAAGAAAATTCATGATACTGGCATTGTTCACAGGGACGTAAAGCCAGCCAACTTAGTGGTTACAAAACGGGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTGAGGATTGGAAAGAATTATGTTCCCAACCGCTTCCTTTTGGATCCTGACTATTGCCCCCCAGAATTGTATGTACTCCCAGAAGAAACACCAAGTCCTCCACCGGAGCCAATTGCTGCTTTCCTTTCACCAATCCTATGGCAGTTAAACAGCCCCGATCTGTTTGATATGTATTCTGCTGGGATTGTACTCCTGCAAATGGCAATACCAAGTTTAAGGTCTCCTGCTGCTTTGAAGAATTTCAATTTGGAAATAAAAACTTGTGGATATGATTTGAAAAAATGGAGGGACTTTACTCGCCTCAGGCCTGACTTCCAAATTCTTGATAGTGAATCTGGTAGAGGGTGGGACTTAGCAACAAAGCTTATCTCTGAGAGAGGTTCCTTAAGAAGAGGCCGTTTATCTGCTTCTGCTGCTTTGAGACATCCTTATTTTCTTCTTGGTGGTGATCAGGCAGCTGCAGTCCTGTCAAAATTAAGCTTAAGCAGAAAGTGA 1536 0.4251 MNAMASLLPPTATATATTTIQHNQMTICFSPLKPTTPNNVSFLTNRFKSNPAKCNALFDSVAKGLLENTVSLDQFPSLQSGLVQFQRVTEDLSDIQRWGFLIFGGLIWIYLTARPGVLIGAIDAYLLAPIQLGLDNLSGRRNLKRSDFLVGDKLGEGSFGVVYSGVLASKNVDVEERVQKRGRGKATTQLDVKSKDKVILKKVKVGIQGAEEFGDFEEWFNYRLSRAAPETCAEFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLADYMKDRNFPSNLESVMFGRVLQGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNRFLLDPDYCPPELYVLPEETPSPPPEPIAAFLSPILWQLNSPDLFDMYSAGIVLLQMAIPSLRSPAALKNFNLEIKTCGYDLKKWRDFTRLRPDFQILDSESGRGWDLATKLISERGSLRRGRLSASAALRHPYFLLGGDQAAAVLSKLSLSRK. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09905 511 Pfam Protein kinase domain 299 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09905 511 Gene3D Phosphorylase Kinase; domain 1 136 259 - -
Seca3g09905 511 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 56 511 - -
Seca3g09905 511 ProSiteProfiles Protein kinase domain profile. 148 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09905 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 319 331 IPR008271 GO:0004672|GO:0006468
Seca3g09905 511 SUPERFAMILY Protein kinase-like (PK-like) 145 493 IPR011009 -
Seca3g09905 511 Gene3D Transferase(Phosphotransferase) domain 1 290 494 - -
Seca3g09905 511 SMART serkin_6 148 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09905 Seca-Chr3 242066669 242071110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09905 148 348 MAP Kinase Kinase Kinase AT3G13530 25.000 2.14e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Seca3g09905 Pkinase 6.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09905 - - gmx:100795624 784.252