Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09904 ATGAACGGTGATGATGAATGCGTAAGAACTAAGAAGGAATGGGAGCCTGATTTGAAATTCAAAAAGCAAGTGTCCGTTGCTCAACGATTGAATTCTACAACGGCTATATTATATATTGATTCATTCAACTGGACGATTCATTTCACAGTTAGAATTCGGTTGAGAGAGAGAGAAAGAGAGTTGGCAATGGAGAAGACAGGAGTGGTAGTATTATCGGCGAAGGAAGCATTCGAGAAGCTTGAGAAGGTTGGAGAAGGGACATATGGGAAGGTCTACAGAGCAAGAGAGAAGGCCACTGGGAAGATCGTTGCTCTCAAGAAGACTCGCCTCCATGAGGACGAAGAAGGTGTCCCTCCCACCACTCTTCGTGAAGTTTCCATTCTCCGAATGCTCTCCCGCGATCCCCATGTCGTCAGGTTAATGGATGTGAAACAGGGTCAGAACAAGGAAGGGAAGACCGTCCTCTACTTGGTCTTCGAGTACATGGATACCGATCTCAAGAAATACATTCGCAGTTTCCGCCAAACCGGAGAAAACATCCCACCCAAAACCATCAAAAGCTTGATGTACCAACTTTGCAAGGGTGTTGCTTTCTGCCACGGCCATGGAATCTTGCACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGAAAAACAATGATGCTTAAAATAGCTGACCTTGGACTTGCTCGAGCATTTACTGTGCCAATTAAGAAGTACACCCATGAGATACTAACCCTGTGGTATAGAGCTCCTGAAGTTCTTTTGGGTGCTACCCATTACTCAATGGCAGTGGATATGTGGTCCGTTGCCTGCATCTTTGCTGAACTTGTCACCAAGCAAGCACTCTTTCCTGGTGATTCTGAGCTGCAACAACTCCTTCATATATTCAGGCTGTTGGGCACTCCTAATGAAGAGGTGTGGCCAGGTGTTAGTAAACTGATGAACTGGCATGAGTACCCTCAGTGGAGCCCTCAGAGTATGTCAACTGCTGTTCCAAATTTGGATGCGCTTGGACTTGATCTATTATCTCAAATGTTGCAATATGAACCATCCAAGCGGATTTCTGCAAAGAAAGCTATGGAACACCCTTACTTCGATGATCTGGACAAGACCTATCTTTAG 1128 0.4557 MNGDDECVRTKKEWEPDLKFKKQVSVAQRLNSTTAILYIDSFNWTIHFTVRIRLRERERELAMEKTGVVVLSAKEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKYIRSFRQTGENIPPKTIKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSMAVDMWSVACIFAELVTKQALFPGDSELQQLLHIFRLLGTPNEEVWPGVSKLMNWHEYPQWSPQSMSTAVPNLDALGLDLLSQMLQYEPSKRISAKKAMEHPYFDDLDKTYL. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09904 375 FunFam Cyclin-dependent kinase 2 165 374 - -
Seca3g09904 375 Pfam Protein kinase domain 77 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09904 375 Gene3D Transferase(Phosphotransferase) domain 1 164 374 - -
Seca3g09904 375 ProSiteProfiles Protein kinase domain profile. 77 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09904 375 Gene3D Phosphorylase Kinase; domain 1 72 163 - -
Seca3g09904 375 FunFam Cyclin-dependent kinase B2,2 73 163 - -
Seca3g09904 375 PANTHER CELL DIVISION PROTEIN KINASE 75 368 - -
Seca3g09904 375 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Seca3g09904 375 SMART serkin_6 77 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09904 375 SUPERFAMILY Protein kinase-like (PK-like) 73 371 IPR011009 -
Seca3g09904 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09904 Seca-Chr3 242060965 242062955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09904 63 375 Core Cell Cycle Gene Families AT1G20930 85.714 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Seca3g09904 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09904 K07760 - gmx:100808302 599.356