Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09900 ATGAGAAAATGCAAGAGGAACATTATCAAATTGTGTGTTGTTCCGTTCTCTCTTTTCTTTTCTCTGTTCTTGTTCACTGCTCATCTCGCCGGAGCTGCCGATTACGAGCCCGCCGACAAGATTTTCCTCAACTGCGGCGCTCCGTCTGACGCCACCGACGACGACGGCCGGAAATGGACAACCGACATCGGATCCAAGTTCACTTCCTCCGCCGCCGGAGAAAGCTCCACAACTTCGCCGGCGGCCACTCAGGACCCTGCCGTTCCTCAAGTCCCTTACATGAACGCCCGCATTTTCCGTTCACCTTTCACCTACACTTTTCCGGTGGCTCCTGGTCGGAAATTCCTCCGGCTGCATTTCTACCCTGCTTCCTACGCCGGACTCGACGCTTCCGATGCTCGATTCTCCGTCACCGCCGAGTCCTACACTCTGCTCAGGAACTTCAGCGCCTTGGAAACCAAGTTAGGGTTGAACTACGGTTACATTGTGAAGGAATATTCCATCAACGTTGATGGCGAAAAACTCACCGTCATTTTCACCCCTGCCACGAAGGCCTATGCGTTTGTGAATGGGATTGAGCTTGTGTCCATGCCTGACATTTACTCCTCCTCTGGTGACGGAAGCACTGACACCATGGTCGTCGGCACAAACACACCTTTCATCATTGACAACAGCACAGCACTTGAAAATATCTATCGCTTGAACGTTGGAGGAAATGTTATCTCGCCTTCACATGACACTGGCCTTTTCAGGTCATGGGCTGATGATGTGCCTTTTCTGTTTGGTGCTACCGTTGGAACAACGGAGCTTGCTGACCCGGAAGTGAAGATTGAGTACCCGCCAGGGACACCTTCTTCCATTGCTCCTGTTGATGTCTATGCCACTGCCAGGTCATCGGGTCCCAATGCCAGTGTCAACATTAATTACAACATGACTTGGGTTTTTTCTATTGCTTCAGGCTTTTCTTATCTTGTTAGACTCCATTTTTGTGAAGGCTCTACTGCCATCTTCAAGGTTAATCAGAGGGTGTTTGATATATTCCTCCATAATCAAACTGCTCAGGAGGGTGCTGATGTTATTGCCTGGGCAAAGGAGTTTGGGCTTTCACATTCAAATGGGGTTCCTGTGCATAAGGATTATGTTGTGTTTGTTCCCAATGGGGAACCCTGGCAGGACCTATGGATTTCACTTCATCCTTATACAAGTTCAAAACCTCAATATTATGATACAATTTTGAATGGAGTGGAGATATTCAAAATCAATGACACTAAAGGTAGTCTGGCTGGGCCAAACCCCCCTCCTCTTCCAACTGATCCTTCAATGGATAGAGCATCTAGTCATGGAAAGTCATCATCAAAGAATAGAACAAGAACAATTGCTGTTGCTGGTGGTGTGATAGGAGGAGTTGCTTTAGTCCTTTTGCTTGTGATGTTTGCTTTTGCTGCCCGGAGGCGCCACAGGCATGGACAAGAGTCTAGTGCGGGTGAAGGGCCATCTGGTTGGCTCCCTCTTTCTCTGTATAGTAATTCACACTCTGCAGGTTCTGCCAAGACCAACACCACAGGGAGTCATGCATCCTCTCTGCCATCAAACCTTTGTCGCCATTTCTCCTTTGCTGAGATCAAGGCAGCCACAAACAACTTTGATGAGGCCTTGCTCCTTGGGGTGGGAGGATTTGGTAAGGTTTACAAAGGAGAAATAGATGGTGGAACAACCAAAGTAGCAATCAAGCGTGGGAACCCACTTTCTGAGCAAGGGGTGCATGAGTTCCAAACTGAGATTGAAATGCTCTCTAAACTTCGTCATCGCCACCTTGTTTCATTGATTGGATACTGTGAAGAGAACACTGAGATGATCCTTGTCTATGACTATATGGCTTATGGTACAGTCAGGGAGCATCTGTACAAGACTCAAAAGCCTCCCCTGCCATGGAAGCAGAGGCTGGAGATATGCATTGGAGCTGCTAGGGGGTTACACTACTTGCACACTGGTGCTAAGCACACCATCATCCACCGTGATGTGAAGACAACAAACATTTTGTTAGATGACAAGTGGGTGGCAAAGGTGTCTGATTTTGGATTGTCAAAAACTGGCCCAACATTGGACAACACTCATGTAAGCACTGTTGTGAAGGGAAGTTTTGGGTACTTGGATCCAGAATACTTCAGGAGGCAGCAACTCACTGAAAAATCTGATGTTTACTCCTTTGGTGTGGTTCTGTTTGAGACATTGTGTGCTCGCCCTGCTTTGAACCCAACCCTTGCCAAGGAGCAAGTGAGCTTAGCTGAGTGGGCACCCTATTGCTACAAGAAAGGCATTCTTAATCAAATCATTGATCCTTATCTCAAGGGCAAGATAGCACCTGAGTGCTTTAATAAGTTTGTTGAGACTGCCATCAAGTGTGTGGCAGACCAAGGCATTGAGAGGCCATCCATGGGTGATGTCTTGTGGAACCTTGAATTTGCCTTGCAGCTTCAAGAGAGTGCAGAGGAGAGTGGCAAGGGCATGCACAATGAAGAGGAAACCCTGTACACAGATTCTAAAGGGAAGAAAGACAATGATGCATCACCAGGTTTTGATGGCAATGTGACTGACTCCAGGAGCAGTGGCATGAGTATGAGCATTGGTGGTAGAAGTTTAGCAAGTGATGACTCTGATGGACTAACACCCAGTACTGTGTTTTCCCAGATCGTGAATCCAAAGGGGCGTTGA 2712 0.4768 MRKCKRNIIKLCVVPFSLFFSLFLFTAHLAGAADYEPADKIFLNCGAPSDATDDDGRKWTTDIGSKFTSSAAGESSTTSPAATQDPAVPQVPYMNARIFRSPFTYTFPVAPGRKFLRLHFYPASYAGLDASDARFSVTAESYTLLRNFSALETKLGLNYGYIVKEYSINVDGEKLTVIFTPATKAYAFVNGIELVSMPDIYSSSGDGSTDTMVVGTNTPFIIDNSTALENIYRLNVGGNVISPSHDTGLFRSWADDVPFLFGATVGTTELADPEVKIEYPPGTPSSIAPVDVYATARSSGPNASVNINYNMTWVFSIASGFSYLVRLHFCEGSTAIFKVNQRVFDIFLHNQTAQEGADVIAWAKEFGLSHSNGVPVHKDYVVFVPNGEPWQDLWISLHPYTSSKPQYYDTILNGVEIFKINDTKGSLAGPNPPPLPTDPSMDRASSHGKSSSKNRTRTIAVAGGVIGGVALVLLLVMFAFAARRRHRHGQESSAGEGPSGWLPLSLYSNSHSAGSAKTNTTGSHASSLPSNLCRHFSFAEIKAATNNFDEALLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDYMAYGTVREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDDKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFETLCARPALNPTLAKEQVSLAEWAPYCYKKGILNQIIDPYLKGKIAPECFNKFVETAIKCVADQGIERPSMGDVLWNLEFALQLQESAEESGKGMHNEEETLYTDSKGKKDNDASPGFDGNVTDSRSSGMSMSIGGRSLASDDSDGLTPSTVFSQIVNPKGR. 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09900 903 MobiDBLite consensus disorder prediction 832 855 - -
Seca3g09900 903 FunFam FERONIA receptor-like kinase 226 421 - -
Seca3g09900 903 MobiDBLite consensus disorder prediction 68 85 - -
Seca3g09900 903 Gene3D - 40 197 - -
Seca3g09900 903 Gene3D - 227 421 - -
Seca3g09900 903 MobiDBLite consensus disorder prediction 859 903 - -
Seca3g09900 903 MobiDBLite consensus disorder prediction 426 454 - -
Seca3g09900 903 SMART serkin_6 548 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09900 903 Pfam Malectin-like domain 43 420 IPR024788 -
Seca3g09900 903 FunFam Receptor-like protein kinase FERONIA 625 835 - -
Seca3g09900 903 PANTHER OS03G0124300 PROTEIN-RELATED 14 490 IPR046957 GO:0004672
Seca3g09900 903 ProSitePatterns Serine/Threonine protein kinases active-site signature. 669 681 IPR008271 GO:0004672|GO:0006468
Seca3g09900 903 Pfam Protein tyrosine and serine/threonine kinase 554 816 IPR001245 GO:0004672|GO:0006468
Seca3g09900 903 FunFam Receptor-like protein kinase FERONIA 520 624 - -
Seca3g09900 903 CDD TM_EGFR-like 457 488 - -
Seca3g09900 903 CDD STKc_IRAK 554 820 - -
Seca3g09900 903 ProSiteProfiles Protein kinase domain profile. 548 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09900 903 FunFam FERONIA receptor-like kinase 40 198 - -
Seca3g09900 903 ProSitePatterns Protein kinases ATP-binding region signature. 554 577 IPR017441 GO:0005524
Seca3g09900 903 Gene3D Transferase(Phosphotransferase) domain 1 625 847 - -
Seca3g09900 903 MobiDBLite consensus disorder prediction 830 903 - -
Seca3g09900 903 SUPERFAMILY Protein kinase-like (PK-like) 523 821 IPR011009 -
Seca3g09900 903 Gene3D Phosphorylase Kinase; domain 1 509 624 - -
Seca3g09900 903 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09900 Seca-Chr3 241939743 241942940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09900 27 903 Receptor kinase-like Gene Family AT3G51550 71.073 0.0 1254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca3g09900 Malectin_like 3.1e-36 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09900 - - gmx:100499644 1358.58