Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09884 ATGAACAACAATTCATTTAATGGTCAAATTCCACACGAACTTTCAAAGCTACCCAAGCTTCAGCACTTGCTTGTGGACAATAATAACTTGTCTGGCTATCTTCCACCAGAATTCTCCATGTTGCCAGAATTGCGCATACTCCAACTTGATAACAATAATTTCAGCAGGACCGGAATTCCTTCTACCTATGCAAACTTATCCAAACTTGTAAAACTAAGTCTAAGAAACTGCAGTTTGCAAGGAGCTATTCCTGATTTCAGTTCAATATCCAATCTTAGTTATATAGATCTTAGTTGGAACCTTCTTACTGGACCTATACCATCAAATAAACTTTCAGACAATATAACCACTATTGATCTGTCCAATAATTATCTCAATGGATCAATCCCAAGAAGCTTCTCATATCTTCCTCGTCTTCAAGAACTGTCACTAAAGAACAATTTCTTGTCCGGGTTCATACCTACTAGTATATGGAAGAACATGTCCTTCAGTATGAATGCTAAACTTGCAGTTGATCTCCGTAACAACTCATTTTCAGACATTTTGGGATATATGAACCCCCCAGCAAATGTCACCTTGAGGCTTGCTGGCAATCCTATCTGCAAGAACACCAGCACGCAAAATATTGATCAATACTGCAGAACTAAAGCAGATAAAGGTGCCAAAGACTCAACAAGTTCAACAGTTCACTGTCCAGTGCAAGCTTGTCCTGTTGACAATTTCTTTGAATATGTTCCAGCTTCCCCCATTCCCTGCTTTTGTGCATCTCCTCTGAGAATTGGATACCAGCTGAAAAGCCCAAGTTTTTCTTATTTTCCTCCATATAGAACTTCTTTTGAACTATATATTACTCAGTCTTTAAACTTAGACCACTATCAACTATCAATAGATTCGTATGCTTGGGAAGAGGGACCTCGTCTTTCAATGTATTTAAAACTTTTTCCTTCATTCAATGATTCTCACTCAAGCGTGTTCAATTCAAGTGAGGTCCGTCGTATTTTAGGGACATTTACATCATGGAAATTTCATCGCAATGATTTTTTTGGACCATATGAACTCCTAAACGTCACTCTGCTGGGACCTTATGCAAATTTAAATTTTGAGTCAGAAGGGAGTAAAACTAGTGCAAGCATATTAATAGCTGCTACTATAGCATCTGTTGCTTGTGCAATAGCAATATCTGCATTAGTGACTTTCCTGATTGCTAGAAGATGTGCCAAATGCCAATACCAGCTTTCCAGGAAACGTATGTCCTCTGATAAATCCATCAGAATTGTTGGCATGAAAACATTTACATTTAAAGAATTGGCTCTAGCTACTGACAAGTTTAGCAGCTCGAAAAGAGTTGGCACAGGTGGTTATGGGAATGTTTATAAAGGCATTTTGTCTGATGATACACCTGTGGCCATAAAGCGAGCGGAAGAAGGCTCCTTACAAGGTCAAAAGGAATTTTTGACTGAGATTGAGCTTTTATCAAGGTTACATCATCGAAATCTTGTCTCATTGATTGGGTACTGTAATGAAAAAGGGGAGCAGATTCTGGTTTATGAATTCATGCCCAATGGCACACTACGAGAGTGGATCTTTGGTAAAAGTAAAACCAAGGAAAGCCTCAATTTTGGTACAAGATTAAGAATTGCAATGGATTCAGCCAAAGGCATACTATATCTGCATACTGAGGCTAACCCTCCTATATTTCACCGAGATATTAAGGCCAGTAATATACTTCTTGATTCCAATTTCACTGCAAAAGTAGCTGACTTTGGACTCTCACGGCTTGTACCATACCTTGATGATGAAGGAACTATGCCCAAGTATGTGTCAACAGTTGTGAGGGGAACACCTGGTTACCTGGATCCTGAGTACTTACTGACTCACAAGTTGACAGACAAATGTGATGTTTATAGCTTGGGAATTGTGTTTCTGGAGCTTTTGACCGGCATGAAACCAATATCACACGGAAAAAACATTGTTCGTGAGGTTAATGTGGCGTGTCAGTCTGGTATGACACTTTCCATCATAGACAGCAGGATGGGGTGCTATCCATCTGATTGTGTTGAGAAGTTTTTGACTCTGGCTCTCAGTTGTTGCCATGACAATCCAGAGGAGAGACCTTCAATGCCAGATGTGGTAAGGGAGCTGGAAAATATTCTTGAAATGTTGCAAGAAACTGAAACTAATTCCTCAGATGTTACCTCTGAAAGTTCTGGTAATCAGCATCCTACCTGA 2229 0.3943 MNNNSFNGQIPHELSKLPKLQHLLVDNNNLSGYLPPEFSMLPELRILQLDNNNFSRTGIPSTYANLSKLVKLSLRNCSLQGAIPDFSSISNLSYIDLSWNLLTGPIPSNKLSDNITTIDLSNNYLNGSIPRSFSYLPRLQELSLKNNFLSGFIPTSIWKNMSFSMNAKLAVDLRNNSFSDILGYMNPPANVTLRLAGNPICKNTSTQNIDQYCRTKADKGAKDSTSSTVHCPVQACPVDNFFEYVPASPIPCFCASPLRIGYQLKSPSFSYFPPYRTSFELYITQSLNLDHYQLSIDSYAWEEGPRLSMYLKLFPSFNDSHSSVFNSSEVRRILGTFTSWKFHRNDFFGPYELLNVTLLGPYANLNFESEGSKTSASILIAATIASVACAIAISALVTFLIARRCAKCQYQLSRKRMSSDKSIRIVGMKTFTFKELALATDKFSSSKRVGTGGYGNVYKGILSDDTPVAIKRAEEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCNEKGEQILVYEFMPNGTLREWIFGKSKTKESLNFGTRLRIAMDSAKGILYLHTEANPPIFHRDIKASNILLDSNFTAKVADFGLSRLVPYLDDEGTMPKYVSTVVRGTPGYLDPEYLLTHKLTDKCDVYSLGIVFLELLTGMKPISHGKNIVREVNVACQSGMTLSIIDSRMGCYPSDCVEKFLTLALSCCHDNPEERPSMPDVVRELENILEMLQETETNSSDVTSESSGNQHPT. 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09884 742 Gene3D Ribonuclease Inhibitor 1 110 IPR032675 -
Seca3g09884 742 Pfam Leucine Rich Repeat 114 135 IPR001611 GO:0005515
Seca3g09884 742 ProSiteProfiles Protein kinase domain profile. 443 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09884 742 SUPERFAMILY Protein kinase-like (PK-like) 423 714 IPR011009 -
Seca3g09884 742 SMART serkin_6 443 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09884 742 Gene3D Transferase(Phosphotransferase) domain 1 519 739 - -
Seca3g09884 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 565 577 IPR008271 GO:0004672|GO:0006468
Seca3g09884 742 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 519 730 - -
Seca3g09884 742 ProSitePatterns Protein kinases ATP-binding region signature. 449 471 IPR017441 GO:0005524
Seca3g09884 742 CDD STKc_IRAK 449 717 - -
Seca3g09884 742 FunFam Leucine-rich repeat protein kinase family protein 407 518 - -
Seca3g09884 742 PANTHER RECEPTOR-LIKE PROTEIN 55 1 718 - -
Seca3g09884 742 SUPERFAMILY L domain-like 2 203 - -
Seca3g09884 742 Gene3D Phosphorylase Kinase; domain 1 413 518 - -
Seca3g09884 742 Pfam Protein kinase domain 444 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09884 742 MobiDBLite consensus disorder prediction 722 742 - -
Seca3g09884 742 Gene3D Ribonuclease Inhibitor 111 237 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09884 Seca-Chr3 241616038 241625178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09884 1 726 Receptor kinase-like Gene Family AT5G01950 63.237 0.0 891
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca3g09884 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09884 - - gmx:100815005 1101.27