Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09877 ATGGCCAACCTTACTAATTCCAATTCGAAGAAGAATGAGTGTGAGTATGACCACGAGAAACCAGAATCCAAATTAGAAGATGAAGAAAGCTTCTCGTATGCTGTGCAACTTGGCAACTCTATTGTGCTTCCCATGGCACTCCAATCTGCAACGGAGCTGGGCGTATTTGACGTCTTGCAAAAGGCAAGTAGAAGCGCTAAGCTCTCTTCCAAGGAGATTGCGTCTAAGCTTTCCTGCAATAATCCAGAAGCAGCTGCGATGTTAGATCGCGTCCATCTTCATTGTTTATACTTCATGCTACGCGATTGCTTTCAAGGGTTTCGGGTGTGTCATTCGTTGGGAGAAGGAACGGGATTTGGAAAAGAACACTGTTGA 375 0.4507 MANLTNSNSKKNECEYDHEKPESKLEDEESFSYAVQLGNSIVLPMALQSATELGVFDVLQKASRSAKLSSKEIASKLSCNNPEAAAMLDRVHLHCLYFMLRDCFQGFRVCHSLGEGTGFGKEHC. 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09877 124 Pfam Dimerisation domain 45 90 IPR012967 GO:0046983
Seca3g09877 124 SUPERFAMILY "Winged helix" DNA-binding domain 26 91 IPR036390 -
Seca3g09877 124 Gene3D - 9 97 IPR036388 -
Seca3g09877 124 MobiDBLite consensus disorder prediction 11 27 - -
Seca3g09877 124 MobiDBLite consensus disorder prediction 1 27 - -
Seca3g09877 124 FunFam Caffeic acid 3-O-methyltransferase 11 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09877 Seca-Chr3 241523838 241524212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09877 24 91 Monolignol Biosynthesis Gene Families AT5G54160 45.588 4.14e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09877 K13066 - tpra:123922925 98.9821