Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09876 ATGATTTCAAACTCCACTAGTGTGGCTGAGGTGTTTAGTCGTATTGACCACAAGTTTGATCTCATGTATGCCAAGCGTGCTTTTGTCCACTGGTACGTGGGTGAGGGTATGGCAGAAGGTGAATTTTCTGAAGCTCGTGAGGATCTGGTTAATAAGGACAATGTTGCTTTGATTGTTACCGACACCTTGCATGAGAGAGATGTTCAAGAACTACTTGAAAAATGCCATCCACTGGGCATGTTTGACAGTATTGCTACTCTGGCAGGGATGAATTTTGAAGGCAAACATATTGATGGCCATGATGTTCTGAATTTTTTTGCAGGATGA 327 0.4251 MISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMAEGEFSEAREDLVNKDNVALIVTDTLHERDVQELLEKCHPLGMFDSIATLAGMNFEGKHIDGHDVLNFFAG. 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09876 108 Gene3D Helix hairpin bin 8 53 IPR023123 -
Seca3g09876 108 FunFam Tubulin alpha chain 8 54 - -
Seca3g09876 108 PANTHER TUBULIN 1 49 IPR000217 GO:0005874|GO:0007017
Seca3g09876 108 SUPERFAMILY V-type ATP synthase subunit C 53 88 IPR036079 -
Seca3g09876 108 SUPERFAMILY Tubulin C-terminal domain-like 1 50 IPR008280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09876 Seca-Chr3 241523256 241523582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09876 53 88 Primary Pumps ATPases(2) AT3G28710 91.667 1.10e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09876 K07374 - ath:AT1G50010 100.523