Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09873 ATGGGACGTGAAGATACTAAGAAGAAGAAGAAGAATGCAAAATCCTGTGGTTTTGAGTCACTGGGTCTGAATCCAAATGTGTTCAAAGGAATCAAACGCAAAGGGTACAAAGTGCCCACTCCAATTCAGAGGAAGACCATGCCCCTCATCCTTTCTGGCTCCGATGTTGTTGCCATGGCTCGTACTGGTTCTGGTAAAACGGCAGCGTTTCTTGTCCCCATGATTCACCGCCTCAACCAGCATCTTCCTCAGGGTGGCGTTAGAGCCCTCATTTTGTCCCCTACTAGGGACTTGGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTTCGAGTTAGTTTGTTAGTTGGTGGTGATAGTATGGAAAGTCAGTTTGAGGAGTTAGCTCAGAGTCCTGACATTATAATTGCCACTCCTGGTAGGCTTATGCACCATTTGTCTGAGGTTGATGATATGACCTTGCGTACTGTCGAGTATGTTGTTTTTGACGAGGCTGATTGTTTGTTCGGCATGGGTTTTGCTGAGCAATTGCATCAAATTCTTGCTCAGCTTGGTGAGAATCGCCAGACCTTGCTTTTCAGTGCTACTTTACCTAGCGCACTTGCTGAATTTGCTAAGGCTGGTTTGAGAGACCCTCAGCTTGTTCGGCTGGATGTGGAAACTAAGATTAGCCCTGACTTGAAGCTTGCCTTTTTCACTTTGAGGCAGGAAGAGAAGTATGCGGCATTGCTCTATTTGATCAGGGAGCATATTGGTTCTGATCAGCAGACATTAATTTTTGTATCCACAAAGCATCATGTGGAATTTCTCAACGTATTGTTTCGGGAAGAGGGTATTGAGCCATCTGTATGTTATGGTGACATGGATCAAGATGCTCGCAAAATCCATGTATCAAGGTTTAGGGCAAGAAAGACGATGTTGTTGATTGTGACAGACATTGCAGCTCGGGGAATTGACATTCCACTGCTTGATAATGTTATCAATTGGGACTTCCCTCCAAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGTACTGGTACTGCTTATTCTTTTGTGACTTCAGAGGATATGGCTTACCTTTTGGATCTTCATCTGTTTCTCTCAAAACCAATCAAAGCTGCTCCCACTGAAGAAGAGGTCTTGCAGGATATGGATGGAGTGAAGTCAAGAATTGACCAGGCCATGGCAAACAGAGAAACCATATATGGTCGTTTCCCCCAAAAAGTCATTGATCTTGTTTCTGATAGAGTTAGGGAAGTTATTGATACTTCTGCGGAACTGGAATCATTGCAGAGAACCTGTACAAATGCATTTCGTTTATATTCAAAGACAAAACCCTTGCCCTCAAAGGAGTCCATTAGAAGAGTAAAGGATTTACCCCGTGAAGGGCTGCATCCAATTTTCAATAATGTGTTGGAAACAGGGGAGTTAATGGCACTTGCGTTCTCTGAGCATTTGAAAATGTTTAGGCCAAAGCAGACCATTTTGGAAGCTGAGGGGGAAGCATCTAAATCAAAGCATCTACAGGGCTCTTCTGGCCAATGGGTTGATGTAATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTCCATGAACAGCATTCTAAGAGTAATAAGGAAAAGGAGGAAATTCAATCAGAAACCACTCCGTTTGTGGAGAAAGGGAGAAAAGCGGCACGTGGCTCTAAGCGAAAGCCCCAAAGTTTCAAGGATGAGGATTATTATATAAGTTCAATACCTAAAAATCAACACACGGAGGCAGGCCTTGCAGTAAAAGCTAATGAAGACTTTACTTCAAATAGATTGGAAGCTGCTGTCCTAGATCTAGTTGCAGATGATAGTACTGGCATTAAGAAACAAAGATCTGTATATCACTGGGATAAGAGAAGTAAAAAGTACATCAAGTTAAACAATGGTGAGCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACGAAGGCCACCAAGACTGGCATATATAAAAAGTGGAAAGAACGGTCACACAGCAAGATATCTCTTAGAGGGACAAATACTGATGGTGAAGCTCAGGAATCAAGAAGTTCGACAGCATCTTACCGAGGAGGTCGAAGGAATTTTAGAGGCGGCAAGAAGCAGAATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAGATTCGAAAGGAGAGGCAGAAAAAAGCCAACAAAATTTCTTATATGAAGAGCAAGTCACAAAAGGGTAAAAAATTTGGCAAAAATGGGAAAAAAAGAAAAGCCAAATAG 2328 0.4265 MGREDTKKKKKNAKSCGFESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMIHRLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMTLRTVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDVETKISPDLKLAFFTLRQEEKYAALLYLIREHIGSDQQTLIFVSTKHHVEFLNVLFREEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMAYLLDLHLFLSKPIKAAPTEEEVLQDMDGVKSRIDQAMANRETIYGRFPQKVIDLVSDRVREVIDTSAELESLQRTCTNAFRLYSKTKPLPSKESIRRVKDLPREGLHPIFNNVLETGELMALAFSEHLKMFRPKQTILEAEGEASKSKHLQGSSGQWVDVMKRKRAIHENIINLVHEQHSKSNKEKEEIQSETTPFVEKGRKAARGSKRKPQSFKDEDYYISSIPKNQHTEAGLAVKANEDFTSNRLEAAVLDLVADDSTGIKKQRSVYHWDKRSKKYIKLNNGERVAANGKIKTESGAKTKATKTGIYKKWKERSHSKISLRGTNTDGEAQESRSSTASYRGGRRNFRGGKKQNSMPNAHVRSEIKDMDQIRKERQKKANKISYMKSKSQKGKKFGKNGKKRKAK. 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09873 775 SMART ultradead3 35 242 IPR014001 -
Seca3g09873 775 SMART DBP10CT_2 622 684 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Seca3g09873 775 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 687 - -
Seca3g09873 775 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 47 220 IPR014001 -
Seca3g09873 775 MobiDBLite consensus disorder prediction 752 775 - -
Seca3g09873 775 SMART helicmild6 273 354 IPR001650 -
Seca3g09873 775 Pfam Helicase conserved C-terminal domain 244 354 IPR001650 -
Seca3g09873 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 372 IPR027417 -
Seca3g09873 775 MobiDBLite consensus disorder prediction 548 582 - -
Seca3g09873 775 MobiDBLite consensus disorder prediction 684 775 - -
Seca3g09873 775 Pfam DBP10CT (NUC160) domain 622 683 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Seca3g09873 775 Gene3D - 235 463 IPR027417 -
Seca3g09873 775 Gene3D - 2 223 IPR027417 -
Seca3g09873 775 Pfam DEAD/DEAH box helicase 40 207 IPR011545 GO:0003676|GO:0005524
Seca3g09873 775 MobiDBLite consensus disorder prediction 691 712 - -
Seca3g09873 775 CDD SF2_C_DEAD 242 363 - -
Seca3g09873 775 MobiDBLite consensus disorder prediction 732 751 - -
Seca3g09873 775 CDD DEADc_DDX54 17 221 IPR033517 -
Seca3g09873 775 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 16 44 IPR014014 GO:0003724
Seca3g09873 775 MobiDBLite consensus disorder prediction 548 571 - -
Seca3g09873 775 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 244 393 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09873 Seca-Chr3 241487893 241495963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09873 18 387 Eukaryotic Initiation Factors Gene Family AT1G72730 31.989 5.76e-58 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09873 K14808 - gmx:100806274 1332.39