Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09857 ATGTCGACATACTCTGTCTCAGTAAAAGGAAAATCCGTGTCAGAGTCAGACAATACTCCACAAACTGAGTACGATGTTTTTGTTAGCTTCAGGGGCGACGACATCCGCGACGGTTTTCTTAGCCACTTGATTGAGGCTTTTCATCGGAAGAAAATAAGAGCCTTTGTAGATGATAAACTTCAAATGGGAGATGCTTTGAACAAATCTTCTAATCAAGCAGGAATTAAGTCATCTGATTTTCGACATGATGGTGAACTTGTTGAAGAAGTCGTCAATCTTTTGTTGAAGAGATTGTGTAAATACCCACTTAACTCAAAAGGACTTATTCACTCAAAAAGACTTATTGGGATTGACAGACAAATGGCACATTTAGAATGGTTTTACGTCAAGAATCAGAACACCCTCGTGTTATTGGAATTTGGGGAATGGGTGGTATTGGCAAGACAACCATTGCAAGTGAAGTATGTAACAAACTACGGAGAAGTTGCGAAAATTGACACACCAAATGGGTTGTCCAATGGTATTGTGAGAAGGATTGATGGTATGAAGGTTCTTATTGTTCTTGAAGATGTGAATGATTCAGATCATTTGGAAAACTTATTATTGGAAGCTCGTGATATGCTTGGATCAGACAGTAGAATAATTATAACAACTAGAGATAAGCAAGTGCTTACTGCTTGCAAAGCTGATGCTATACACAAGGTTGGAGAGTTGAGTTGTAGTGAAGCACTTGAGCTTTTCAATTTGAATGCCTTTAACCAAAGTTATCGGGAAAAGGAGTATTATGAGCTATCAAAGAGGGTGGTTGATTATGCCAGTGGCATTCCATTAGTTCTTAAAGTTTTGGGATGTCTTCTTCACGGAAAAGATAAGGAAGTATGGGAAAGTCAACTAAACAAGCTTGAAAAAATGTCAAACAAAAAAGTTTACGATGTAATGATACTGAGTTATGTTGATCTAGATCATAAAGAGAAAGAGATTTTTTTAGATCTTGCATGTTTCTTCATTGGATCAGATTGGGAATTGACAGTGGGTGACATAAAAAGTTTATTGAGAGATGGTGAAAGTGATAATTCAGTGATTGCTGTGTTTGAAAGGCTGAAAGATAAAGCTCTTGTAACTTTTTCTGAGGATAATATTAATGGTGTATCTATGCATGATATCATACGAGAAATGGCTTGGGAGATTGTTCGCCGAGAATCTAGTGAAGAACCTGGAAGCCGTAGTCGGTTATGGGATTTTGATGACTGTAGGGAAGTGCTGGAAAATGACAAGGGGACTGAGGCCATCAGAAGCATACGTGTGTTAAGTTCATCTTTGAAGTTAAGCCCCCATACATTTGCTAAGATGAGCAAACTAAAATTTTTGGATTACTATGGCTCTTGTGATTGTCCTCAAGGGCTTCAATCTTTGTCATCTGAACTAAGATATCTTCGTTGGGTTTATTACCCTCAGGCAACCTTACCACAGAAATTTTCTGCGGAAAAACTTGTTATATTGAACTTGTCATTTAGCAAAATAATAAAACTTTGGGACGGAGTGCAGAATCTCGTGAATTTAAAACAAGTTAAACTCAATTGTTGTGATAACTTGTTAGAGCTGCCAGACTTTTCCAAAGCTACAAATCTTGAAGTACTAGAAGCTGAATATTGTAGGGAGTTGTCAGGGGTGCATTCATCTATTTTCTCTCTCAACAAGCTCAATACATTGGATCTTTGTTACTGCGGAAAAATTGCCACACTTACCAGTGATACCCATTCGAGCTCCATCAGTTATCTCAACGTTGATTGCTGTTATAGTCTAAGAGAATTCTCAGTGACATCAGAGAATATGAAAAAACTGGATTTAACAAACACTATGGTCAAAGCATTGCCCTCATCATTTGAACATCAAAGCAAGCTTGAAATCCCATGTCTAAGAAGCAGTTACATTAAGGATTTACCTTCATGCATGAAGAAACTTACAAGATTGCAATATCTGGACATAACAAATTGCGCTCGGCTTCAGACAATACCAGAGCTTCCCCCCTCCCTTGAAACTCTCCTTGCTGGAGGTAAATATGGACCAGGACAACTGGAGACTGTATGCTTCCCTACAGTTTCTGAACAATTCAAGGAAAATAGGAAATGGGTTGAGTTATGGAATTGCTTGGATTTGGATGAACACTCTCTCATGGCTATTGAGTTGAATGTGCAAATCAACATGGAGAAATTTGCACACCAACATCTATCTGCACCAAAACATGATTATGTTGAAAGTTACAATCTTGGATATGATTATGATGATTCTTATCAAGTTGTGTATGTGTATCCAGGAAGCAGTGTTCCAGAGTGGTTGGAGCATAGAACAATGGAGGGTTATATACTTATTGATCTCTCTTGTACTCCACATTCCCCTCAGTTGGGCTTCATTTTCTGCTTCATCCTCGAGGATTATCGATTCTTAAATGATGATCAGTTGCTATTTGAAATCACTATCAGTGATGGTAATGAAGAGGGTAGTGCCACAATGTGTACGTAG 2520 0.3813 MSTYSVSVKGKSVSESDNTPQTEYDVFVSFRGDDIRDGFLSHLIEAFHRKKIRAFVDDKLQMGDALNKSSNQAGIKSSDFRHDGELVEEVVNLLLKRLCKYPLNSKGLIHSKRLIGIDRQMAHLEWFYVKNQNTLVLLEFGEWVVLARQPLQVKYVTNYGEVAKIDTPNGLSNGIVRRIDGMKVLIVLEDVNDSDHLENLLLEARDMLGSDSRIIITTRDKQVLTACKADAIHKVGELSCSEALELFNLNAFNQSYREKEYYELSKRVVDYASGIPLVLKVLGCLLHGKDKEVWESQLNKLEKMSNKKVYDVMILSYVDLDHKEKEIFLDLACFFIGSDWELTVGDIKSLLRDGESDNSVIAVFERLKDKALVTFSEDNINGVSMHDIIREMAWEIVRRESSEEPGSRSRLWDFDDCREVLENDKGTEAIRSIRVLSSSLKLSPHTFAKMSKLKFLDYYGSCDCPQGLQSLSSELRYLRWVYYPQATLPQKFSAEKLVILNLSFSKIIKLWDGVQNLVNLKQVKLNCCDNLLELPDFSKATNLEVLEAEYCRELSGVHSSIFSLNKLNTLDLCYCGKIATLTSDTHSSSISYLNVDCCYSLREFSVTSENMKKLDLTNTMVKALPSSFEHQSKLEIPCLRSSYIKDLPSCMKKLTRLQYLDITNCARLQTIPELPPSLETLLAGGKYGPGQLETVCFPTVSEQFKENRKWVELWNCLDLDEHSLMAIELNVQINMEKFAHQHLSAPKHDYVESYNLGYDYDDSYQVVYVYPGSSVPEWLEHRTMEGYILIDLSCTPHSPQLGFIFCFILEDYRFLNDDQLLFEITISDGNEEGSATMCT. 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09857 839 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 173 698 IPR044974 GO:0006952
Seca3g09857 839 SUPERFAMILY "Winged helix" DNA-binding domain 308 422 IPR036390 -
Seca3g09857 839 Gene3D - 237 321 IPR042197 -
Seca3g09857 839 Gene3D Ribonuclease Inhibitor 429 606 IPR032675 -
Seca3g09857 839 Pfam TIR domain 24 69 IPR000157 GO:0007165
Seca3g09857 839 SUPERFAMILY L domain-like 437 687 - -
Seca3g09857 839 ProSiteProfiles TIR domain profile. 22 183 IPR000157 GO:0007165
Seca3g09857 839 Pfam Leucine Rich Repeat 496 515 IPR011713 -
Seca3g09857 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 331 IPR027417 -
Seca3g09857 839 Gene3D - 147 233 IPR027417 -
Seca3g09857 839 Gene3D Ribonuclease Inhibitor 607 685 IPR032675 -
Seca3g09857 839 PRINTS Disease resistance protein signature 652 668 - -
Seca3g09857 839 PRINTS Disease resistance protein signature 178 192 - -
Seca3g09857 839 PRINTS Disease resistance protein signature 272 286 - -
Seca3g09857 839 Gene3D - 18 80 IPR035897 -
Seca3g09857 839 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 91 IPR035897 -
Seca3g09857 839 Pfam NB-ARC domain 171 307 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09857 Seca-Chr3 241304882 241308076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09857 178 673 WRKY Transcription Factor Family AT4G12020 34.825 1.22e-68 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09857 - - aprc:113850949 758.059