Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09849 ATGTCGCTGAACATGAAAACCCTAACCCAAGCATTGGCGAAGACCGCCGCGGTAATTGAGAAGAAAGTGCAGACCACGGTGCAGGAGGTAACAGGACCAAAGCCACTTCAGGACTATGAGCTCATCGACCAGATCGGCTCTGCGGGCCCCGGTCTGGCCTGGAGGCTATACTCAGCCCGGGCCCGTGATCCCTCCCGCCAGCACCAGTATCCGGTTGTCTGCGTCTGGGTATTGGACAAGCGAGTTCTTTCCGAGGCCCGAATGCGTGCCGGGCTCACCAAAGCCGCCGAGGATTCCTTCTTAGATTTGATTCGAACCGATGCCGCTAAGCTCGTACGGCTCAGGCATCCAGGTGTGGTTCATGTCGTTCAGGCCCTTGATGAGAGCAAGAATGCAATGGCAATGGTCACCGAACCCTTGTTTGCTTCTGTTGCTAATACTCTTGGCAATGTGGACAATATTCCAAATGTTCCTAAAGAACTCAGGGGAATGGAAATGGGACTGTTGGAGGTGAAACATGGTTTACTTCAGATAGCTGAATCCCTGGACTTTCTCCATAACCATGCTCATCTTATTCATCGAGCTATATCACCTGAGAATATTTTTATCACCTTGAGTGGAGCCTGGAAACTTGGTGGATTTGGTTTTGCAATTTCTGCTTCTCAGACCCCTGGTGACTCATCTAATCTGCAAGCCTTCCATTATGCTGAATATGACGTTGAAGACTCTATTTTGCCACTTCAGCCATCACTTAATTACACTGCTCCTGAGCTTGTGAGGAGCACCGCATCTTCAGCTGGGTGCCCTTCTGATATTTTCAGTTTTGGATGCCTTGCCTACCATTTAATTGCCCGCAAGCCTTTGTTTGATTGCCACAACAATGTGAAAATGTACATGAATACCTTGACTTACTTATCCAGTGATGCTTTCTCATCTATCCCATCCGAACTGGTTCCTGACTTGCAAAGGATGCTCTCTCCAAATGAGTCTTTCAGGCCAACTGCGATGGATTTTACAGGTTCACCATTTTTTCGGAATGACACTAGATTGCGTGCTTTGCGCTTCCTTGACCACATGCTTGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGATTTCGATTCCCGTGTATTGCGATACAAGGTCCTACCCCCACTTTGTGCTGAACTTAGGAATGTGGTGATACAACCAATGATTCTACCAATGGTTCTAACCATTGCGGAGTCTCAGGACAAGAATGATTTTGAGCAATCAACACTTCCGGCCCTTGTCCCTGTCTTAACTGCTGCTGCTGGTGAGACACTGTTACTACTTGTGAAGCACACCGACCTTATAGTAAACAAGACTAGTCAAGAGCATTTAATTTCACATGTTCTTCCAATGATTGTGCGGGCCTATGATGATACCGATGCTCGTATACAAGAAGAGGTCCTGAAAAAATCTGTATCCCTTTCCAAGCAACTTGATGCACAGCTGGTGAAGCAAGTGGTTTTGCCCCGTGTTCATGGACTAGCACTTAAAACAACAATTGCTGCGGTTAGAGTCAATGCTTTGCTGTGCCTAGGAGACATGGTTAACCGACTTGATAAACATTCTGTCCTGGATATCTTGCAAACAATTCAGCGGTGTACTGCTGTTGACCGTTCTCCTCCAACCCTTATGTGTACCCTTGGGGTTGCAAATTCTATTTTTAAGCAGTATGGTGTAGAATTTGTGGCTGAGCATGTTCTTCCTTTACTTATGCCCCTCCTGACTGCTCAACAACTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAGTAA 1845 0.4618 MSLNMKTLTQALAKTAAVIEKKVQTTVQEVTGPKPLQDYELIDQIGSAGPGLAWRLYSARARDPSRQHQYPVVCVWVLDKRVLSEARMRAGLTKAAEDSFLDLIRTDAAKLVRLRHPGVVHVVQALDESKNAMAMVTEPLFASVANTLGNVDNIPNVPKELRGMEMGLLEVKHGLLQIAESLDFLHNHAHLIHRAISPENIFITLSGAWKLGGFGFAISASQTPGDSSNLQAFHYAEYDVEDSILPLQPSLNYTAPELVRSTASSAGCPSDIFSFGCLAYHLIARKPLFDCHNNVKMYMNTLTYLSSDAFSSIPSELVPDLQRMLSPNESFRPTAMDFTGSPFFRNDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNVVIQPMILPMVLTIAESQDKNDFEQSTLPALVPVLTAAAGETLLLLVKHTDLIVNKTSQEHLISHVLPMIVRAYDDTDARIQEEVLKKSVSLSKQLDAQLVKQVVLPRVHGLALKTTIAAVRVNALLCLGDMVNRLDKHSVLDILQTIQRCTAVDRSPPTLMCTLGVANSIFKQYGVEFVAEHVLPLLMPLLTAQQLNVQQFAKYMLFVKDMLQ. 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09849 614 Gene3D Transferase(Phosphotransferase) domain 1 162 348 - -
Seca3g09849 614 Gene3D - 349 612 IPR011989 -
Seca3g09849 614 Gene3D Phosphorylase Kinase; domain 1 37 138 - -
Seca3g09849 614 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 38 614 - -
Seca3g09849 614 CDD PK_SCY1_like 45 346 - -
Seca3g09849 614 SMART serkin_6 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09849 614 SUPERFAMILY Protein kinase-like (PK-like) 34 348 IPR011009 -
Seca3g09849 614 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09849 614 SUPERFAMILY ARM repeat 333 607 IPR016024 -
Seca3g09849 614 Pfam Protein kinase domain 104 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09849 Seca-Chr3 241228849 241240973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09849 92 346 AGC Kinase Gene Family AT3G10540 24.335 8.14e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL2 Seca3g09849 Pkinase 3.5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09849 K17541 - gmx:100788400 1124.38