Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09837 ATGTCTGAAGGTTATTCTTCTTCGGACTCAGACTCCGACCCTGGTTGTTGTTCCAGCAGATCTGATGCTTCAGCTGAACTCAAGCTATACCGAGCCTTCATCTTCTCCGTTCCCATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTACGTCTTCTACCTTCGACCCCGAAGGGTTGATTGGTCCTCTCTTAGGATGAGGCCCTTCGGTGTTATACAGGACAATAACAATGCCATCTCCACGTCTGGTTTGGGGTTGAACAAAGAATTAAGAGAGATGCTACCTATTATTGTGTACAAGGAAAGCTTCTCTGTCAAAGATACTCTATGCTCAGTATGCCTTTTAGACTACCAACCAGAGGATAGACTTCAACAGATACCTGCATGTGGCCATACATTTCACATGAGCTGCATTGATCTTTGGCTTGCCAACCACAACACCTGCCCTCTTTGCCGCTTGTCCCTACTAACCACTGCTAAATCTTCAACAGAGACATCCAATATGCAGACCTGCATACTTAGCAAGGTAGCATATCACGTATTGGTACCTGCACCATGCCACCATGTACTAGACAGTATTGCAAACTTGGTAACTAAGAGGCCACAGAGCAATGATGAAACACAGAGGCCACAGAACAATGAAGAAACACAGATGCCACAGAGCAATGTAGAAACACAAGCCATGGAATTCTCTGACGCAAGATCTGCTAGGCACATTGAATCCACTGCTCTCCAGAATGTCTCTGGAGAAGTTGCAATCAATGCACATTGCGTTGATGTTCAAGGGCAAAATGTGCAAAACAATCAAAGGAACATGAATATATGA 825 0.4461 MSEGYSSSDSDSDPGCCSSRSDASAELKLYRAFIFSVPIFFTLILLFLFYVFYLRPRRVDWSSLRMRPFGVIQDNNNAISTSGLGLNKELREMLPIIVYKESFSVKDTLCSVCLLDYQPEDRLQQIPACGHTFHMSCIDLWLANHNTCPLCRLSLLTTAKSSTETSNMQTCILSKVAYHVLVPAPCHHVLDSIANLVTKRPQSNDETQRPQNNEETQMPQSNVETQAMEFSDARSARHIESTALQNVSGEVAINAHCVDVQGQNVQNNQRNMNI. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09837 274 CDD RING-H2_EL5-like 110 152 - -
Seca3g09837 274 SMART ring_2 110 151 IPR001841 -
Seca3g09837 274 FunFam RING-H2 finger protein ATL7 75 157 - -
Seca3g09837 274 SUPERFAMILY RING/U-box 94 157 - -
Seca3g09837 274 Pfam Ring finger domain 110 152 IPR001841 -
Seca3g09837 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 158 IPR013083 -
Seca3g09837 274 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Seca3g09837 274 MobiDBLite consensus disorder prediction 200 222 - -
Seca3g09837 274 PANTHER OS11G0150450 PROTEIN 41 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09837 Seca-Chr3 241087977 241092137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09837 19 176 C3H Transcription Factor Family AT4G10150 60.248 3.02e-63 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09837 K19039 - gmx:100794211 249.595