Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09824 ATGGAAAGAGACTTTGATAGAGGATACATAAAGAAAGGGCCATGGAGTAGTGAAGAAGATGAAGTGTTGCTCAAGCATGTCAACAAGTATGGTCCAAGGGATTGGAGCTCCATTCGATCCAAAGGCTTGTTGCCGAGAACTGGAAAATCTTGTCGCCTTAGATGGGTTAACAAGCTTAGACCCAACTTGAAGACGAAATCTGTTTCATTTTATGACGAAATTTTGTACTGTAATGGCAGTGGTTGCAAGTTTTCAGCAGAGGAAGAAAGGGTGGTGATAGAATTACAGGCACAATTTGGGAACAAATGGGCCAAAATTGCTACGTATTTGCCAGGGAGAACAGATAATGATGTGAAGAACTTTTGGAGCAGCAGGAGAAAAAGGTTAGAGAGGACGATGCAGCAGCAGAGTCCACCACAATCAAAGCCGCAGAAAAACAAAGGAAAAGCTCCTCTTAATCAAGTACATGTTAAAGAGGTTACTGCATGCAGTTCTAATCAGCCGGAGGAAAACCATTCTTACCCCATGCCCTATATGGGAAACACAGAGGTGTTTGAGATGATTAACCTACCAGATTTGACAAAGCCAAACTACCAAAATTTGGAAAGTGATCTTAATGCAGTTAAGGTTGAGGCCACCCCACTTCACATGGTACCATCTTTTGAGTCTTCATCAGGGTACAACTTTCCTCTACTCCCTGAATCACAAATGGACTTTCCACTATTCCCTGAGTGCCAGGACCTTGTTCCGGAGCCCTTTGGCCTTAATTTTATTGATATGTTGGAGCAGAAAAAAGGTTCAGAATGTGTCTGGGGCGAGAAGTTTGGGACCAGGTCCACTACTCTTGGATTGGAAGGAAATTCCCAGAGTACAAGTTCAAACTGCTTGTTTAAGGACTTCCCAACTGAGATTTTTGAATACTTTGAGCATGTTCCAACCTCATCAGAACAATAA 954 0.4256 MERDFDRGYIKKGPWSSEEDEVLLKHVNKYGPRDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTKSVSFYDEILYCNGSGCKFSAEEERVVIELQAQFGNKWAKIATYLPGRTDNDVKNFWSSRRKRLERTMQQQSPPQSKPQKNKGKAPLNQVHVKEVTACSSNQPEENHSYPMPYMGNTEVFEMINLPDLTKPNYQNLESDLNAVKVEATPLHMVPSFESSSGYNFPLLPESQMDFPLFPECQDLVPEPFGLNFIDMLEQKKGSECVWGEKFGTRSTTLGLEGNSQSTSSNCLFKDFPTEIFEYFEHVPTSSEQ. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09824 317 CDD SANT 83 122 IPR001005 -
Seca3g09824 317 PANTHER TRANSCRIPTION FACTOR DUO1 6 316 - -
Seca3g09824 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 130 IPR017930 -
Seca3g09824 317 MobiDBLite consensus disorder prediction 129 152 - -
Seca3g09824 317 Pfam Myb-like DNA-binding domain 15 68 - -
Seca3g09824 317 Gene3D - 83 155 - -
Seca3g09824 317 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Seca3g09824 317 SUPERFAMILY Homeodomain-like 10 122 IPR009057 -
Seca3g09824 317 FunFam MYB transcription factor 12 64 - -
Seca3g09824 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Seca3g09824 317 SMART sant 11 61 IPR001005 -
Seca3g09824 317 SMART sant 80 128 IPR001005 -
Seca3g09824 317 FunFam Transcription factor GAMYB 82 152 - -
Seca3g09824 317 Pfam Myb-like DNA-binding domain 83 123 IPR001005 -
Seca3g09824 317 CDD SANT 14 59 IPR001005 -
Seca3g09824 317 Gene3D - 11 64 - -
Seca3g09824 317 ProSiteProfiles Myb-like domain profile. 83 126 IPR001005 -
Seca3g09824 317 MobiDBLite consensus disorder prediction 133 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09824 Seca-Chr3 240895856 240897475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09824 10 313 MYB Transcription Factor Family AT3G60460 40.798 2.71e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g09824 Myb_DNA-bind_6 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09824 K09422 - gmx:100793689 441.425