Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09822 ATGGGGATAGACTTAGGGCACTCTTCTCGAGAACAAAACTGTTTCAACGACAAAAAGAATGTCGAGTTCAATTCAAAGGAGGAAGCTTTCTCGTACTACAAAGAATATGCCAAATCAATGGGATTCTCTGCCATCATTAAAGCTAGTCGTCGATCTCGAATCTCTGGAAACTTCATTGATGCCAAATTCGCATGCACCAGATACGGAAACAAGCCAAAGCCACAATCTTTTTCAACCCCTTCAAGCAATGACATGGTAAAAAAGAAACGGGGTAGAGTGAATTCGTCTTGGGCCAAAACGGATTGCAAGGCCTGCATGCATGTCAAGAGAAGGCAAGATGGTAGGTGGATTATATCCAGTTTCATCAAAGAGCATAACCATGAAATTTTCCCTAACCATATAAATTTGGATTTAGGAAATTGTCATAATGATGATGATGATAATTCTGAGGCAACAACCAAAAAATTGTCTGTCACAATTGCTAGGAAAAGAAAATCTGGTGAGTGTAGCAAAGTTGAGAATAAAAATAAAGGTGCTGCTGGGAATCAGCGTTTGGGTTTTCATGAAGGAGACCTTGGAGCTTTGCTTGGCCATTTTATGTGTATGCAAGATGAGAATCCTAACTTCTTTTATGCTGTTGATTTTAATGAGGAGCAGCAATTGAGGGGTGTTTTCTGGGTTGATGCCAAAAGCAGGGTTGATTATAGGCATTTTAGTGATGTGGTTCTTTTGGACACCACACATGTGAAGAATGATTATAAGCTTCCATTTGTTCCTTTTATTGGTGTGAACCACCACTTTCAGTTCCTGTTGTTAGGGTTGGCTTTTGTGTCTGATGAGTCTAAATCAACATATGTGTGGCTGATGCAGGCCTGGCTCAGGGCAATGGGTGGACAAGCTCCAAAAGTGATGCTTACAGACAGAGATGTGGCTTTGAAAGAAGCTGTTGCTGAAGTGCTTTCTGACTCTTGTCATTGTTTTTGTTTGTGGCATGTGCTGAGTAAGGTTCCTGAGAAGCTAAGTCATGTAACACTGCAGCATGGGAACTTTATGGCCAAATTTAACAAATGTGTTCTGAGGTCCTGGACAAGTGAACAGTTTGAGAAGAGATGGTGGAAAATGGTTGAGAAATTCAATTTAGGTGGTGATGATTGGTTATGCTCGATTTATGAGGATCTTGAACGATGGATTCCAGCATATATGAAAGACAAATGTTTAGCAGGGATGTCTACTATGCAAAGATCAGATGCTATAAACTGTTTGTTGGACAAGTATATACAGAGGAAAACTACATTGAAAGAGTTTTTGGAGCAGTACAAAGTGATATTGCGAGATAAATGTGAAGAGGAAGCAAAAGCAGATTTTGAAACATTGCATAAACAACCAGCATTGAAATCCCCATCACCTTTTGGGAAACAGATGGTAAAATTATACACACATGTAATATTTAAGAAATTCCAGAGTGAGGTTCTGGGAGCTGTTGCTTGTCATCCAAGAAAAGAAAGTGAAGATGGGCCAACAAAAGTGTTTAGGGTTCAAGATTTTGAAGACAATCAAGATTTTATTGTCATGTGGAATGAATCAACTTCTGAAACATCATGTTCCTGCTATTCATTTGAATTCAATGGTTTTCTTTGTAGGCATGTAATGATTGTGCTACAAATTTGTGGTGTACATAACATCCCATCTCGGTATATATTAAAACGTTGGACAAAAGATGCCAAGAGACAAACAGAAAAAGATCTGTCAGATGTGGTTGACTCTAGGGCTAAGCGCTATAATAGTCTATGTCAACGAGCCTTTGATCTGGGTGATGAAGGGTCTTTATCACAAGAGAGTTACATTATTGCTGTAAATGCATTGGAAGAAGCTTTGAGAAAGTGTGAGAGCTTGAAGGATTCAATTCAGAGTAACATAGAACCAAACCCATCAAATTTTGGTTCTCAAGAGGTGAATACTAGTAACAATGCTTGTCATGCAAATAAAAGGAATGGTACTTTTAAGAAAAGACAGGTACACCCAAAACCAAAGACCATTTCTATAGGAGTCAATTCCAGCTGCCAGCAAATGGGAAACCCCAATATACAAGCAGCTGGCCTTGATTGTTCGTATGAATCACAGCAGAGCATTCAAGAGATGGTATGGTGTCGGTTTTGCCATTTTCCAAGTCACTTGAGTCTTATGAATCTTGAAATTTGGGACCTTTTTGCAAACTCTGTTACAGGATCAGCTGAGCTCAAGAGCTCAGAACCTGGAGGGGTATTTTGTTTCTCAACAAATTGA 2283 0.3925 MGIDLGHSSREQNCFNDKKNVEFNSKEEAFSYYKEYAKSMGFSAIIKASRRSRISGNFIDAKFACTRYGNKPKPQSFSTPSSNDMVKKKRGRVNSSWAKTDCKACMHVKRRQDGRWIISSFIKEHNHEIFPNHINLDLGNCHNDDDDNSEATTKKLSVTIARKRKSGECSKVENKNKGAAGNQRLGFHEGDLGALLGHFMCMQDENPNFFYAVDFNEEQQLRGVFWVDAKSRVDYRHFSDVVLLDTTHVKNDYKLPFVPFIGVNHHFQFLLLGLAFVSDESKSTYVWLMQAWLRAMGGQAPKVMLTDRDVALKEAVAEVLSDSCHCFCLWHVLSKVPEKLSHVTLQHGNFMAKFNKCVLRSWTSEQFEKRWWKMVEKFNLGGDDWLCSIYEDLERWIPAYMKDKCLAGMSTMQRSDAINCLLDKYIQRKTTLKEFLEQYKVILRDKCEEEAKADFETLHKQPALKSPSPFGKQMVKLYTHVIFKKFQSEVLGAVACHPRKESEDGPTKVFRVQDFEDNQDFIVMWNESTSETSCSCYSFEFNGFLCRHVMIVLQICGVHNIPSRYILKRWTKDAKRQTEKDLSDVVDSRAKRYNSLCQRAFDLGDEGSLSQESYIIAVNALEEALRKCESLKDSIQSNIEPNPSNFGSQEVNTSNNACHANKRNGTFKKRQVHPKPKTISIGVNSSCQQMGNPNIQAAGLDCSYESQQSIQEMVWCRFCHFPSHLSLMNLEIWDLFANSVTGSAELKSSEPGGVFCFSTN. 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09822 760 Coils Coil 618 638 - -
Seca3g09822 760 ProSiteProfiles Zinc finger SWIM-type profile. 521 557 IPR007527 GO:0008270
Seca3g09822 760 Pfam SWIM zinc finger 523 554 IPR007527 GO:0008270
Seca3g09822 760 Pfam MULE transposase domain 241 334 IPR018289 -
Seca3g09822 760 SMART 26again6 532 559 IPR006564 GO:0008270
Seca3g09822 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 14 629 IPR031052 GO:0006355
Seca3g09822 760 Pfam FAR1 DNA-binding domain 31 131 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09822 Seca-Chr3 240872073 240876319 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g09822 FAR1 1.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09822 - - pcin:129315780 980.704