Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09813 ATGGAGCTTGATTTGAATGAGGAGCCTTTGGATAGAACTCATACTTCAGTATTTGAATTTGATTCTTTATTGAATGAACTAGAATCTGCTGCCCAGGGACATATACAGGACCGTATTAGACACCTTGAAGCAGTAACTTCCAGAGCTAGGCTGCGTGAGAGGTGGCCACCGGTTCACTCTCCGGTTCAGATAACCAACCTTACTGGAGAAGCCGCGGCAACTGTTGCTCAAGGTGAAGGAAGGCAGCACCAACAGGTTGAGGAAGGAGTAGTTGAAAGTGGGAAAGGGGGCAAAAAGGAAGGTGGTGCCCATTTAATAGCTAAAGCTTTGGGGTTGGAAGAAACAGATGCCAGTAAGGCAGGGGGAACAACTGGAAAGTTTTTTGATTGTAATGTGTGTTTGGACAAGGCAAGAGATCCTGTTTTGACTTGCTGTGGTCACTTGTTTTGTTGGCCATGCTTCTATCAGTTGCCATATGCTTATTCAGATGCAAAGGAATGCCCTGTTTGTCAAGGAGAGGTAACTGAAACAGGCATTACTCCAATTTATGGGAATTCAAGGGCAAGTGCTGATTGTCAGTTGGATTTGAAAAAAGCAGGTTTGAGAGTTGCTCCTCGACCTCAAGCATCTAGAATTGAGAGTATCAGGCAGAAGCTAATAAACCAACAGGCATCTTCTTCTATGGTCCAAAACATTCAGCGGTTTAGTAACCTTGTTGGTGGACTAGGACAGCCAGTTCAGTCAGAAAGCCCCAATACTGCAACTGATGGAAATGATAGTTTTCTCATTGAATCTTATCCGCAGACAGACAATAATCAACATACTGATTCTCGTCCAATTTCAAGCCTGTTAGAGCAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCCTTCAATTCTGCAATGGATTCTGCAGAAAGATTTGTTGAGGACCTTGAATCATATGTCCATGGCCAACACATAGGAGGAAGCAGGCGGTCAAATCGTCGTGCTGTTTATAGAAATTCAACTTTTAATGTTGTTGCCGGTATTAACCAGTCAGTGAGTCTTACCCAAGATTTTGCTGCAACTAATTCTGCATCTGCAGCTTATGTGTCTCCTATAAATAGGAATGTTGACACAGTGGCTGTTCTAGGCTCAGGAATCCAGACAACAGATAGTAATATACAGATTAATCCATTAAACCCTTCTTCATCTTACAGTAGAAGAGGTACTGGTGTTTCAAGACAAGTTTCAAATCGGCGCAGAAGAAGAAGATAG 1260 0.4294 MELDLNEEPLDRTHTSVFEFDSLLNELESAAQGHIQDRIRHLEAVTSRARLRERWPPVHSPVQITNLTGEAAATVAQGEGRQHQQVEEGVVESGKGGKKEGGAHLIAKALGLEETDASKAGGTTGKFFDCNVCLDKARDPVLTCCGHLFCWPCFYQLPYAYSDAKECPVCQGEVTETGITPIYGNSRASADCQLDLKKAGLRVAPRPQASRIESIRQKLINQQASSSMVQNIQRFSNLVGGLGQPVQSESPNTATDGNDSFLIESYPQTDNNQHTDSRPISSLLEQGAASFSSLSSAFNSAMDSAERFVEDLESYVHGQHIGGSRRSNRRAVYRNSTFNVVAGINQSVSLTQDFAATNSASAAYVSPINRNVDTVAVLGSGIQTTDSNIQINPLNPSSSYSRRGTGVSRQVSNRRRRRR. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09813 419 MobiDBLite consensus disorder prediction 386 419 - -
Seca3g09813 419 ProSiteProfiles Zinc finger RING-type profile. 130 171 IPR001841 -
Seca3g09813 419 MobiDBLite consensus disorder prediction 386 408 - -
Seca3g09813 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 109 299 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca3g09813 419 Pfam Zinc finger, C3HC4 type (RING finger) 130 176 - -
Seca3g09813 419 SUPERFAMILY RING/U-box 127 179 - -
Seca3g09813 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 184 IPR013083 -
Seca3g09813 419 SMART ring_2 130 170 IPR001841 -
Seca3g09813 419 MobiDBLite consensus disorder prediction 243 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09813 Seca-Chr3 240784518 240786684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09813 62 246 C3H Transcription Factor Family AT3G58030 40.741 5.69e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09813 - - cam:101488454 430.254