Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09799 ATGTATGATGTTTTTCTGATAAGCTTTTCAAAGGGAAACAGCTACGCATTCACCGGTCATCTCTATCATGCTTTGCAAAATAATGGAATCAACACCGTCAGATGCAGTGACAATGAAACTGATACTAATATTGTTGAGACAATCAAGAAATCCAGAATTTCAATGGTCGTGCTATGCCAAAACTACGCACGCTCCACTCGGTGCCTTGACATACTGATCAAGATCATTGAGTGTTACGATGCCAAAGGGAAACAAGTTTCGGTAATTTTTCACAATATTGTCGAATGGAATTCTTATGCAGCAGCCATGATTGAATATGAAGAGAACTTGGGGGAACACTCGGATCAGGTGAAAGCATGGAGATCAGCTTTGTCTAGAATTGGCCATGGCGACCTTGCCGGAGAATATTGCACGGATAAGTATGAATCTGGCTTTATCAACAAGGTTATTAGGGACACCTTTGCAAAATTACCTCCACCTCCTGTGCCTTTAGAAATTAAGCATCCAGTTGGACTTGATTCTCACTTTGAAGAGGTGAAATCATTTTTGGATATTGAATCTAATGATGATGCCGTTTGCATGTTGGGAATTTATGGAGATGCTGGAATAGGCAAAACCACATTTGCCGCGTATTTATATAACAAGATCAGGGATCGATTTGAAGCTGGCAGTTTTCTTGCTAATGTCAAAGAAAAATCAAACAATAACAGCAATATTGGTGGTCTAGAAGATCTCAAAAGGACACTTCTATATGAGACTGATAAGGAGGTGGTAGGGTCTCAAATAATAAAACATAAGCTTAGCCATAAAAAAGTTCTTCTGATTTTGGATGATGTTAATAGGATAGAACAATTGGAAGCACTAGCTGGAGAATGTGATTGGTTTGGTTCTGGTAGCTTAATCATTGTAACAACAAGGGATGAAACTGTGCTAGATAAGCATGATGTTGCAATTAAGAAATATAAAATGGAGGAGCTAAGTTTTGGTGACTCGCTACAACTCTTTTGTGGGTATGCCTTTAATATGAGCGAACCTGCAGAAAACTATGCAGATATTTCTACGAAAGTAGTGAGTTATGCAAAGGGTGTTCCACGGGCTTTAGAAGTACTAGGCTCCAATTTAAAGGGTCTAAGTGTAGAGGAATGGGAAATGGAATTGGAGAAATATACCAAGGTTCCAGATACGTTTTATTTTTTGATAAATTCTTTTTGA 1212 0.3837 MYDVFLISFSKGNSYAFTGHLYHALQNNGINTVRCSDNETDTNIVETIKKSRISMVVLCQNYARSTRCLDILIKIIECYDAKGKQVSVIFHNIVEWNSYAAAMIEYEENLGEHSDQVKAWRSALSRIGHGDLAGEYCTDKYESGFINKVIRDTFAKLPPPPVPLEIKHPVGLDSHFEEVKSFLDIESNDDAVCMLGIYGDAGIGKTTFAAYLYNKIRDRFEAGSFLANVKEKSNNNSNIGGLEDLKRTLLYETDKEVVGSQIIKHKLSHKKVLLILDDVNRIEQLEALAGECDWFGSGSLIIVTTRDETVLDKHDVAIKKYKMEELSFGDSLQLFCGYAFNMSEPAENYADISTKVVSYAKGVPRALEVLGSNLKGLSVEEWEMELEKYTKVPDTFYFLINSF. 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09799 403 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 126 IPR035897 -
Seca3g09799 403 Gene3D - 157 320 IPR027417 -
Seca3g09799 403 Gene3D - 1 156 IPR035897 -
Seca3g09799 403 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 391 IPR044974 GO:0006952
Seca3g09799 403 Pfam NB-ARC domain 174 386 IPR002182 GO:0043531
Seca3g09799 403 SMART till_3 1 130 IPR000157 GO:0007165
Seca3g09799 403 PRINTS Disease resistance protein signature 266 280 - -
Seca3g09799 403 PRINTS Disease resistance protein signature 194 209 - -
Seca3g09799 403 PRINTS Disease resistance protein signature 360 374 - -
Seca3g09799 403 ProSiteProfiles TIR domain profile. 1 157 IPR000157 GO:0007165
Seca3g09799 403 Gene3D - 326 397 IPR042197 -
Seca3g09799 403 Pfam TIR domain 2 156 IPR000157 GO:0007165
Seca3g09799 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 393 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09799 Seca-Chr3 240573590 240575838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09799 17 372 WRKY Transcription Factor Family AT4G12020 28.375 2.84e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09799 - - vum:124827482 418.313