Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09798 ATGCATGATCTAATACAAGACATGGGTAGAGAGATTGTTAGAAAGGAGTCTCCAGAGAGCCCGGGTGATCGTAGCAGATTATGGTCTCATAAAGAAGTTCTTCAAGTACTTAAAGAAAACTCAGGAAGTAATACAATTGAAGGAATACTGCTTGACCCCCCTAGTCATGAAGAAGTATATCGTTGGAATGACACTGCCTTTCAGAAGATGCTGAATCTTAGAATTTTGATTGTTCGGAATGCAGTATTTTCAACAGGACCTAGTTATCTACCTAATAGTTTACGGGTACTTGAATGGAAAGGGTATCCATCAAAGTCTTTTCCACCAAACTTTTATCCCTCTAGAATTGTTGATTTCAAGCTACCTCATAGTCCTTTGATATTACAAGGACCATTTCAGAAATTTGAGGATTTGACATTCATCAATCTCTCCCAGTGTCAATCCATCACTCAAATACCTGATATGTCTCAAGCTATAAATTTAAGGGCATTGACACTTGATAGATGTCATAAAGTGGTAAGGTTTGATAAATCCTTTGGATTTATGCCTAACCTTGTGTATGTAAGTGCTTCAGAGTGCAACATGCTCAAAAGTTTTGTGCCTGAAATGTATCTGCCATCTCTGAAGATGCTTTCATTTAACTTTTGCAAAAGACTTGAACACTTCCCAGAAGTAATGCAAAAGATGGATAAGGCATTGAAGATTCACATGATAAATACTGCTATTAAGGAGTTTCCAAAGTCCATTGGTAACCTTGTTGGGCTTGAGTATATAGACATGTCAATGTGCACAAGACTCAATGGTCTATCAAATAGCTTCTTCTTGTTGCCAAAACTTGTCACGTTAATAGTTGATGGATGTTCTCAACTTGGGAAATCATTTGAAAGGTTCAAAGAGACTCATTCAGCAGAAAATGGATGCCCAAATTTGATGACATTGCATATCAGTGAGGCAAATCTGTCATATGAACATCTTCATGCTATTCTTGAAAATTTTCCAAAATTGGAAGACTTGAATGTATCGCACAACAATTTTGTATCCCTCCCAAAATGCATCAAAGGATCTTCGAACTTGAAAAGTCTTGATGTGAGTTATTGCAGGAATCTTAAGGAAATTCCAGAACTGCCGTCAAGTATTCAGAAAGTAGATGCAAGATATTGTCGATCCTTAACTACAAAGGCATCAAGTGTGCTATGGTCCAAGGTTTGTAAGGATAAGGAAAGAATACAAGTTGTGATGCCAAAAACAGAGATTCCAAATTGGTTTGACTATATTGGCAGTGAAGGTATCCCATTTTTCTGGGCCCGTGGAAAGTTTCCTGTTTTAACTCTAGCATTCGTGTTAGGGGAAGTGAAAGAGACTAATGAGATACAAGAGGACACCTTCATCTCACAATTCTTACCTGGAATGATGTCAGATATGTCCCATATTGTTGGTCTTCATGTGTTCATAAACGGCCAAGAAATGTGTCGCAAAGATTATCATTATTGCAATGTTGGGGAGGATCATGTGTTATTATGTGATCTAAAAACTTTGTTTAATGAACAAGAGTGGCAGGGTCTTGAAGATGCATGTGTTGGAGATAATGATTGGAAGGCCATTCAGATTCAATGTGAATCAGACTTGATTCTGAGCCGTTGGGGAATTTACATGTACAAGCAAAAAGCAAACACCAATGATAACGATATCCGATTCAAGCATCCCAATTCCAAAAACATGCCAATGTCATCACCAAAAAGAACTCCTGAAATGTCTAAGCAGAGAATGAGACACATGTCAGAAAATTTTAATCCAAGAGAGATGTTTGGTGACTATTTGCCTCTTCTGGAGTCAGTAGAAACTCCCACTTTTACAAAAGCGTTATTGAGGACGTGGAGGAATGCTAGGGCTGATATTAGAGGGGAAGCTTCAGCCTCTGCCTATGGTGCAAGTTTAATGCAAGAACATGAACAATCTAATTGGGATGTGGTACGCGTTGTGGAGTTGGTGAAGGAAAATGTGCCAAAATATATTGCTGACTCATTCACAGATGACATACAAAATGATAATTTCGTTTATGATGTCTTTCTGAGTTTTAGAGGCGGAACTCGCTACGCTTTCACCGATCATCTCTATCGAGCTTTACTCCGTCATGGAATCAACGCCTTCAGAGACGATCAGGAACTCAGGAATGGGGATGAAATCAGACCTTCTCTTCTTGATGCAATTGAAAATTCCAGAATCTCAATGGTTGTGCTGTGTCAAGACTATGCATCTTCCACTTGGTGCCTCGACGAACTTGCCAAGATCATCGACTCTTATGAAAACAAAGGAAAACCGGTTTCCGCAATCTTTTACAAAGTAGAACCGTCAGATGTACGGTATCAGAAAAATTCTTATGAAGCCGCCATGGTTAAACACGAAAAGAGATTTGGACAATACTCGGAGAAGGTAAAAGCGTGGAGATCAGCTTTGTCCAGAGTATGTGACCTAAGTGGAGAACATTGCAGGGACGACATGTATGAATCGAAGCTTATCGAGAAGATTGTTAAAGACACCTCAGCTAAACTACCTCCCATGCCTTTACAAATCAAGTATCTAGTTGGACTTGATTCTCGCTTTGAACAGGTGAAACCTCTTATTGATATTGATTCTAATAATGCTGTTTGCATGCTGGGGATTTATGGAGTCGGTGGAATAGGCAAAACCACATTTGCCGTGGATCTGTATAACAAGATCAGGCATCAATTTGAAGCTGCAAGTTTTCTAGCTAATGTCAGAGAAAAATCAAATAAAAGCGTCAATGGTCTGGAAGATCTCCAAAGGACACTTCTGTCTGAGATGGGTGTGGAGACAAAAACCATTATGGGCAGTACATTTAGAGGAAGCTCTGAAATAAAACACAGGCTAGGCCATAAAAGAGTTCTTCTAGTCCTGGATGATGTTGATAATGTAAAACAATTGGAATCACTAGCTGGAGGATGTGATTGGTTTGGTCCTGGTAGCAGGATCATTATAACAACAAGAGATACATATGTTCTACATAAGCATGGTGTTGAAATTAAGGAATATAAAATGGAAGAGCTAAACTATCATGAATCCCTTGAACTCTTTTATTGGTATGCCTTTAGTATGAGCAGACCTGTAGAAAACTTTGCAAATATCTCTACTCGTGCAGTAAGTTATGCTAAGGGCATTCCATTGGCTTTGAGAGTAATAGGCTCCAATTTGAAGGGTAGGAGTGTAGAGGAATGGGAAATTGAATTGCAGAAATATAGGAAGGTTCCAGATGCTGAGATTCAAGGTGTACTGGAAATAAGCTACAATAGTCTATCTGACTTGGACCAGAAAATTTTCTTGGACATTGTTTGTTTCTTCAAGGGGGAAAGATGGGACTATGTTAAAAGGATATTAGATGCCTGTGATTTCTATCCAGATATACGAATATTTCGTAGTAAATGTCTCATAACTGTTGATGAAAATGGCTGCTTGGAAGTGCATGATCTAATACAAGACATGGGTAGAGAGATTGTTCGAAAGGAATCGCCATCAAACCCTGGTGACCGCAGCAGACTATGGTCTCACAAAGAAGTTCTTGAAGTACTCAAAGAAAACTCAGGAAATACTGCCATTGAAGGAATAATGCTTAATCCCCCAAAACAAGAAAAAGTAGATCACTGGACTTATACTGCCTTCCTTAAGATGAAGAACCTCAGAATTTTGATTGTTCGGAATACAATATTTTTATCAGGGCCTAGTTATCTGCCAAATAATTTACGGCTACTCGATTGGAAAGGGTACCCATCGAAGTCTTTTCCGCCGGACTTTTATCCCCGCAGAATTGTTGACTTCAAGTTACCTCATAGTACTCTGATATTTGAAAAGCCATTTCAGATATTTGAGGATTTAACATTCATCAATTTCTCCCAGTGTCAATCCATAACTCAAATTCCTGACCTGTCTGGAGCTAAAAACTTAAGAGCATTGACAGTTGATAAATGCCATAAACTGGTAAGGTTTGATAAATCCATTGGATTTATGCCTAACCTTGTGTATTTAAGTGCTTCAAAGTGCACTGTGCTCAAAAGTTTTGTACCAAAAATGTATTTGCCCTCTCTGGAAGTGCTTTCATTTAACCTCTGCAGAAAATTTGAACACTTCCCGCATGTAATGCAAAAGATGACTAAGCCATTAAAGATTCACATGATGAATACTGCCATTAAGGAGTTTCCAGAGTCCATTGGTAACCTTACTGGGCTAGAGTATATTGACATGTCAATTTGCGAAGGGCTCAAAGATCTAAAAAGTAGCTTCTTATTGCTTCCAAAATTTGTCACGTTAAAAATTGATGGATGCTCTCGACTTGGAGAATCATTTAAAAGGTTCAAAGAGAGCAATTCAGTGGCTAATGGCTGTCCAAATTTAATGACACTTCATTTTAGCGAGGCTAATTTATCATATGAAGACCTTTTTGCCATTCTAGAAATTTTTCCAAAATTGGAATACTTGAATGTATCTCACAATGAATTTGTAGCCCTCCCAAAATGCATCAAAGGATCTTTGAAAAGTCTTGATGTGAGTTTTTGCCGGAATCTTAAAGAAATTCCAAAACTTCCATTAAGTATTCAGAAAGTAGATGCCAGACACTGTCGATCCTTAACTTCAGAGGCATCAAGCGTGCTATGGTCTAAGGTTTCAAAAGAGATCCAGAGAATACAAGTTGTGATGCCATTGCCAAAAAGGGAGATTCCAGATTGGTTTGACCATGTTTGCACTCAAGAGATTCCACTTTTCTGGGCTCGCAGGAAGTTTCCCATTGTTGCTTTAGCATTAGTTTTCCAGGAAGTAAAGAAGACAGACACATATTCTGAAATTGAAGATGCTATCGAATTATGGACTGGATTCACGGACTGTCATGTTGTTAGCCTCCACTTGTTTATAGACGGCCAAGAAATATGTGGCAGTGATTACCATCATTTCAATGTCGGGAAAGATCATGTGTTATTGTGTGATCTACGAGTTTTGTTCAGTGATGAAGAGTGGCATGGCCTTGATGCAAGTCTTGGAGATGATTGGAAGGCCATTCAAGTTCAATATGATTCAGACATGATTCTGAGTAATTGGGGAGTTTATGTGTACAAGCAGGAAACAAACATGGATGATATCCAATTCAGGCTTCCCAATCCCAACTCCACACGAGACTACATGCCATCATCACAGTTGGTTCCGAAGGGATCTCCAGAGCAGAAAATGAGACACGTGCTTGAAAGTTTTAATCCAAGAGACATGTTTAGTGAGTATTTGTCTCTAATAGAATCAGAAGAAGGTCCTATCAGGTCTTCAAAAGTATTTTTGAGGTATTGGAGGAACGCTAAGGCTGAAATTAGAGAGGAAGCTTCAGCCTCTGTCTATGGGGCAAGTTTAAAGCAAGAACATGAAGAATCTGTTGTGGATGTGGTAAGGGTCTTAGAGATGATAAAGGAGAATGTACCAAAACATATTGCTGATTCATACCCTGAAGATATGAAAACTGTAGACGGATTAGTGGAAAGATTATTGAAGGCTCGGGTAGAATTAATGAAGGAAAATGGGTTGGACATTGGTATGCCTATTATTCTGGAGTATGCTGATGTAGGGAGAGCTACAACTACAAGTCGACGCTTTTGGGGAACCTTGGAGATAAAAGTAGGAGATCCATTTTACGAAGTAGTGACGAGGAGGCTAAACCAACTTTCTTGGGAATTTTGGACCAGCAATGAAGTCTCACGCTCTGGGTGGTTAGCAAACTCGACGGTACCCATTCTTCTATTGAAATGCCAGCGTCCAGCTACAGAGGAACCTTCAAGCTCTGGCCATGAGGAGTCCTTGGAGGAAGGACACTACAATCATGAATTGGAAGAGTTAATGATAAGAATAGAACAAGATGCTATGAGCTTGAATAAATCTTATGGGAAAATGAAGGCATCTTTTGTTCGAACTGATGACCCAATTTCTCCAGAGTATCTATTGGAAACATTAATCTTCAGAAGACTACTAATCTTGGGAAAATTAACAATGTTTGGATCTTTGACTAAGTTCAAGATAACGCCTTATGGGAAGATAAGGGTAGAGGACGATCCTTTTGGCACGCTGAAGACATGTATCTGGGGTGTGGTGCTGGTTCTTATTGTCCTAACCATATGGTTATTTTATTTTGTAGGATATGTGGGGCTTTTTATTTATAGGATACCGATAATAAAACAGTTATTAGTGTGGGGTTGGTGGCTTATCATGCAAATTATTGTGTCTTGTAAATACTTATACAGGAGAATTTGCAAGATTATGAGAATAAAGGAAAAGGAATTGTAG 6327 0.3888 MHDLIQDMGREIVRKESPESPGDRSRLWSHKEVLQVLKENSGSNTIEGILLDPPSHEEVYRWNDTAFQKMLNLRILIVRNAVFSTGPSYLPNSLRVLEWKGYPSKSFPPNFYPSRIVDFKLPHSPLILQGPFQKFEDLTFINLSQCQSITQIPDMSQAINLRALTLDRCHKVVRFDKSFGFMPNLVYVSASECNMLKSFVPEMYLPSLKMLSFNFCKRLEHFPEVMQKMDKALKIHMINTAIKEFPKSIGNLVGLEYIDMSMCTRLNGLSNSFFLLPKLVTLIVDGCSQLGKSFERFKETHSAENGCPNLMTLHISEANLSYEHLHAILENFPKLEDLNVSHNNFVSLPKCIKGSSNLKSLDVSYCRNLKEIPELPSSIQKVDARYCRSLTTKASSVLWSKVCKDKERIQVVMPKTEIPNWFDYIGSEGIPFFWARGKFPVLTLAFVLGEVKETNEIQEDTFISQFLPGMMSDMSHIVGLHVFINGQEMCRKDYHYCNVGEDHVLLCDLKTLFNEQEWQGLEDACVGDNDWKAIQIQCESDLILSRWGIYMYKQKANTNDNDIRFKHPNSKNMPMSSPKRTPEMSKQRMRHMSENFNPREMFGDYLPLLESVETPTFTKALLRTWRNARADIRGEASASAYGASLMQEHEQSNWDVVRVVELVKENVPKYIADSFTDDIQNDNFVYDVFLSFRGGTRYAFTDHLYRALLRHGINAFRDDQELRNGDEIRPSLLDAIENSRISMVVLCQDYASSTWCLDELAKIIDSYENKGKPVSAIFYKVEPSDVRYQKNSYEAAMVKHEKRFGQYSEKVKAWRSALSRVCDLSGEHCRDDMYESKLIEKIVKDTSAKLPPMPLQIKYLVGLDSRFEQVKPLIDIDSNNAVCMLGIYGVGGIGKTTFAVDLYNKIRHQFEAASFLANVREKSNKSVNGLEDLQRTLLSEMGVETKTIMGSTFRGSSEIKHRLGHKRVLLVLDDVDNVKQLESLAGGCDWFGPGSRIIITTRDTYVLHKHGVEIKEYKMEELNYHESLELFYWYAFSMSRPVENFANISTRAVSYAKGIPLALRVIGSNLKGRSVEEWEIELQKYRKVPDAEIQGVLEISYNSLSDLDQKIFLDIVCFFKGERWDYVKRILDACDFYPDIRIFRSKCLITVDENGCLEVHDLIQDMGREIVRKESPSNPGDRSRLWSHKEVLEVLKENSGNTAIEGIMLNPPKQEKVDHWTYTAFLKMKNLRILIVRNTIFLSGPSYLPNNLRLLDWKGYPSKSFPPDFYPRRIVDFKLPHSTLIFEKPFQIFEDLTFINFSQCQSITQIPDLSGAKNLRALTVDKCHKLVRFDKSIGFMPNLVYLSASKCTVLKSFVPKMYLPSLEVLSFNLCRKFEHFPHVMQKMTKPLKIHMMNTAIKEFPESIGNLTGLEYIDMSICEGLKDLKSSFLLLPKFVTLKIDGCSRLGESFKRFKESNSVANGCPNLMTLHFSEANLSYEDLFAILEIFPKLEYLNVSHNEFVALPKCIKGSLKSLDVSFCRNLKEIPKLPLSIQKVDARHCRSLTSEASSVLWSKVSKEIQRIQVVMPLPKREIPDWFDHVCTQEIPLFWARRKFPIVALALVFQEVKKTDTYSEIEDAIELWTGFTDCHVVSLHLFIDGQEICGSDYHHFNVGKDHVLLCDLRVLFSDEEWHGLDASLGDDWKAIQVQYDSDMILSNWGVYVYKQETNMDDIQFRLPNPNSTRDYMPSSQLVPKGSPEQKMRHVLESFNPRDMFSEYLSLIESEEGPIRSSKVFLRYWRNAKAEIREEASASVYGASLKQEHEESVVDVVRVLEMIKENVPKHIADSYPEDMKTVDGLVERLLKARVELMKENGLDIGMPIILEYADVGRATTTSRRFWGTLEIKVGDPFYEVVTRRLNQLSWEFWTSNEVSRSGWLANSTVPILLLKCQRPATEEPSSSGHEESLEEGHYNHELEELMIRIEQDAMSLNKSYGKMKASFVRTDDPISPEYLLETLIFRRLLILGKLTMFGSLTKFKITPYGKIRVEDDPFGTLKTCIWGVVLVLIVLTIWLFYFVGYVGLFIYRIPIIKQLLVWGWWLIMQIIVSCKYLYRRICKIMRIKEKEL. 2109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09798 2108 Coils Coil 1955 1975 - -
Seca3g09798 2108 SUPERFAMILY L domain-like 1175 1581 - -
Seca3g09798 2108 SMART LRR_bac_2 1490 1509 - -
Seca3g09798 2108 SMART LRR_bac_2 1511 1531 - -
Seca3g09798 2108 SMART LRR_bac_2 355 375 - -
Seca3g09798 2108 SMART LRR_bac_2 332 351 - -
Seca3g09798 2108 Gene3D Ribonuclease Inhibitor 55 234 IPR032675 -
Seca3g09798 2108 Gene3D Ribonuclease Inhibitor 235 400 IPR032675 -
Seca3g09798 2108 Gene3D Ribonuclease Inhibitor 1220 1392 IPR032675 -
Seca3g09798 2108 Gene3D Ribonuclease Inhibitor 1393 1564 IPR032675 -
Seca3g09798 2108 Pfam TIR domain 686 856 IPR000157 GO:0007165
Seca3g09798 2108 ProSiteProfiles TIR domain profile. 684 850 IPR000157 GO:0007165
Seca3g09798 2108 SMART till_3 685 824 IPR000157 GO:0007165
Seca3g09798 2108 PRINTS Disease resistance protein signature 884 899 - -
Seca3g09798 2108 PRINTS Disease resistance protein signature 1056 1070 - -
Seca3g09798 2108 PRINTS Disease resistance protein signature 962 976 - -
Seca3g09798 2108 PRINTS Disease resistance protein signature 1408 1424 - -
Seca3g09798 2108 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 686 1428 IPR044974 GO:0006952
Seca3g09798 2108 Pfam NB-ARC domain 878 1085 IPR002182 GO:0043531
Seca3g09798 2108 Gene3D - 850 1018 IPR027417 -
Seca3g09798 2108 FunFam Disease resistance protein (TIR-NBS-LRR class) 682 851 - -
Seca3g09798 2108 Coils Coil 2101 2108 - -
Seca3g09798 2108 Gene3D - 685 849 IPR035897 -
Seca3g09798 2108 SUPERFAMILY Toll/Interleukin receptor TIR domain 675 826 IPR035897 -
Seca3g09798 2108 Gene3D - 1021 1105 IPR042197 -
Seca3g09798 2108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 853 1115 IPR027417 -
Seca3g09798 2108 MobiDBLite consensus disorder prediction 1 25 - -
Seca3g09798 2108 MobiDBLite consensus disorder prediction 561 582 - -
Seca3g09798 2108 SUPERFAMILY L domain-like 1 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09798 Seca-Chr3 240566172 240585562 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09798 1 300 WRKY Transcription Factor Family AT4G12020 34.385 2.07e-40 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09798 - - cam:101493067 1783.84