Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09795 ATGGCAAATCATTCTGCAACATCCTCAGATTTCAGCTATGATGTTTTTCTAGGTTATTTTAATGGCGGAGTCTGCAACGCATTCATTGATCGTCTTTATCAAGCTTTGCTTGAAAAAGGAATCAATACCTTCAGAGATGGTGTAACTAGACCTGCCTTTGAGGAAATTGAAAAATCCAGATTGTCAATGCTTGTGCTCTGTGAAAAATATGCATCTTCTATAGAGTGCCTTGATGAAATAGTCAAAATCAGTGACTACATTGACAACAAAAGAAAACAGGTCACGGTGATTTTTTACAAAGTGGAACCATCAGAGGTACGTAAACAAAAGGATTCTTATGAAGCAGCGATGGACGAACATGAAAAGAGAAATGGACAAGACCCGGAGAAGATAGAAGTATGGAGGAAAGCTTTGACTAGAGTATGCGACATAAGCGGGGTACATTACAAGTACAATAAGGATGAACCTGGGTTGATAGAGAAGATTGTTAAAGACACATTTACTAAAATAGCTCCCGTGCCTTTTCAAATCAACCGCGTAGTTGGACTTGATGCTCATTTTGAACATGTGAAATCAGTCTTAGATATTGAGTCTAAAGACACTGTGCGCATGTTGGGAATTTATGGAGCTGGTGGAATAGGCAAGACCGCATTTGCTGCCTATCTATATGACAAGATCAGGCACTGTTTCGAAGCTCCAACTTTTCTTCTTCATGACAGAGAAGAAACAAACAGAAGTACTAAAGGCCTAGAAGATCTCCAAATGAAACTTCTATCTCAGATGGGTGAGGAGACAGAAACCAAGGTGGGCAGTACATTTAAAGGAGGCCTTAAGATCAAACATAGGCTTGGCAATAGAAGAGTTCTTCTGGTTTTGGATGATATTGATACCATAGCAAAATTGAAATCACTGGCTGGGGGATGTGATTGGTTTGGTTCTGGTAGTAGGATCATTATAACAACAAGAGATGCAGCTGTGCTAGATAATCATGACATTGAAATTAAGAAATATAAAATGGAGGAGCTAAATGATAGTGACTCTCTTGAACTCTTTAGTTGGAATGCCTTTGATATGAGCAGACCTCTAGAAAAGTTTGAAGATATTTCTCACTGTGCAGTAAGTTATGCAAAGGGTATTCCATTGGCTTTACGAGTAATAGGATCCAATTTGAAGGGTCGAAGAATAGAGGAATGGGAAATTGAATTGGGCAAATATAGGAAGGTTCCACATGCTGATATTCAAAGTGTACTAGAAATAAGCTACTACAGTCTTTCTGAACTAGAGAGGAAGATATTCTTAGACATTGCTTGTTTCTTCAAGGGAGAGAAATGGGTATATGTGGAAAGGATACTGGAGGCTTGTGATTTCTACCCAACTTTTCGAGTATTTGATTCTAAATGTCTAATAACTATTGATGAAAATGGCTGCTTGGAGATGCATGATCTAATAAGAGACATGGGTAGAGAGATTGTTAGGAAGGAGTCGCCATCAAGTCCTGGTAACCGTAGCAGATTATGGTCTCATAAAGATGTACTTCAAGTACTTAAAGAAAACTCAGGAAGCATTAAAATTGAGGGAATAATGCTTCATCCCCCCACACATGAAGAAATAGATAATTGGAGTAATACTGCCTTCAAGAAGATGAAGAACCTCAGAATTCTTATTGTTTGGAATGCAAAGTTTTCCACAGGACCTAGTTATCTACCAAATAGTTTACGGCTACTTGATTGGACGGGGTTTCCATCACAGTCTTTTCCACCTGAATTTTATCCCGAGAGAATTGTTGACTTCAAGCTATCTCATAGTCCTCTGATATTTGCAGAGCTACTTCAGATATTTAAGGATTTGACATTCATCAATCTCTCCCAATGTCAATCCATAACTCAAATACCTAATCTGTCTGGAGCAAAAAACTTAAGAGTACTTACGCTTCACAGATGCCATAAATTGGAAGGGTTTGACAAATCCATTGGATTATATATGTCTAACCTAGTGTATTTAAGTGCATCAGAGTGTACCATGCTCAAAAGTTTTGTGCCAAAAATGTATTTCCCATCTCTGGAAGTTCTTTCATTTAACTTCTGCACAAGACTTGAACACTTCCCTGATGTAATGCGAAGGATGGATAAGCCATTAAAGATTCACCTGATAAATACTGCTATAAAGGAGTTTCCAGAGTCCATTGGTAAACTTACTGGGCTTGAGTATGTAGACATGTCAACTTGTGAAGGACTCAGAGATCTATCAAGAAGCTTTTTATTGTTGCCAAAACTTGTCACATTAAAAGTTGATGGATGTTATCAACTTGGAGAATCATTTAAAAGGTTCAAAGAGAGCCATTTAATAGCAAATGGCTGCCCAAATTTAAAGGCACTTTGTTTCAGCAAGGCTAATCTATCATCAGAAGATCTTCACATAATCCTTGAAATATTTCCAAATTTGGAATACTTGAATGTATCGCACAATGGACTTGTATCCCTTCCAGAATGCATCAAAATATCTTCGCAGTTGAAAAGTCTTGATATAAGTTGTTGCAGGAATCTTTTGGAAATTCCAGAACTTCCATTAAGTATTCAGAGTATAGATGCAAGACATTGTCAATCCTTAATTCCAAAAGCATTAAACGTGCTATGGTCTAAGGTTTGTGAAGAGACGGAAAGAATACAAGTTGTGATGCCAAAAACGGAAATTCCAAATTGGTTTGACTGTGTTGGCAGTGAAGATACTCCTCTTTTCTGGGCTCGTGGAAAGTTCCCCATTGTTGCATTAACCTTTGTGTTCAGTGAGATGAAGATGGATAGGTCGGAATTCTTCCCTGGAGTTGTATCAGCTGAGTCCCACAAGGTTGTTCTCCACTTATTCATAGACAACAAAGAAATATGTCACAAAGATTACCATTGTTGCAGTGTCGGGGAACATCATGTGTTACTGTGTGATCTACGAGTCTTGTTTAATAAAGAAGAGTGGCAGGGTCTTGATGCATGTATTGGAGATGATTGGAAGGCCGTTCAGGTTCAATGTGAGTCACACTTGGCTATGAGTCATTGGGGAGTTTATGTGTACAAGCAGAAAACAAACATGGATAATATCCTATTTAGTTTTCCCAATTCAACAGACCCCATGTCATCATCAAGTTTGGTCCCAAATAAAACTCCACATATACAACATCTTGATCTAGTAGAAGCATTTGGCCAATATTTACATACTTTTAAACTAGAACAATTTGCCTCTGTTGCAAATGAACTATTGAGGTGGTGGAGGAACACTGATGCTGGTGTTAGTGAGGAAGCTTCAGCCCTTGTCTATGGGACAAGTTTAATGCAAGAACACGAAGAGTTTGTGTGGCATGTGTCACGGATTTTAGAGATGTTGATGGAGATTACACCCAAACGTATAGATGATTCAAAATTTCAAAGTGCAGGCCAATTGGTGGTAGAATTATTGATGGCACGGGCACAACCTATGAAGAAAAAAGGCCATGAGACGTTGCACATCAATGTGAGTATGCCTATTATACTAGAGGAATGTGAATACCACCCTTGTACAGATCTAACAAAAGCTCCAAGGGGTCGCTATTGGGGAAGTGTGGTGCTAGAGCTAGAAGAAGGAGATCCACTTGTGTGGAGAATTTGGAAAAGCAAAAAAGCCATTGGGAAGAGGGTAAGCGTTGTTCTATCGAAATGCCAGCTTGCCTCTACAGAGGGTGCTTCAACCTCTGGCCATGGGGAAATTTTGGAGGAAGAATTCAAGGATCCTGCATTGGAAAAATTGATGAGGGGGATAGAGCAAGATGCAATGAGCTTGAATAAATCTCTTGGGAAGTTGAAGGCGACAATTGTTCCAAGAGATGTCCCAGTTTCTGACAAATACATGATGGAAACAACAATCATCAGAGCACAAGAAAGATTGGGAAGGTTGGGACCTAATTTCAAGAAGACACCTTATGGGAAGTTGAGGGTGGAGCACGATTCTCAGGGTACTATTCATATGCAGCATGAGTTGGGGGTGGAGCATGATGCTCAGAGCAGTACCCAGAATAAGTTGGGTCCGACCAAGATTCTTATTAGGTGGATTCAAAGCATCTGTACCCCCAAGTGA 4098 0.3934 MANHSATSSDFSYDVFLGYFNGGVCNAFIDRLYQALLEKGINTFRDGVTRPAFEEIEKSRLSMLVLCEKYASSIECLDEIVKISDYIDNKRKQVTVIFYKVEPSEVRKQKDSYEAAMDEHEKRNGQDPEKIEVWRKALTRVCDISGVHYKYNKDEPGLIEKIVKDTFTKIAPVPFQINRVVGLDAHFEHVKSVLDIESKDTVRMLGIYGAGGIGKTAFAAYLYDKIRHCFEAPTFLLHDREETNRSTKGLEDLQMKLLSQMGEETETKVGSTFKGGLKIKHRLGNRRVLLVLDDIDTIAKLKSLAGGCDWFGSGSRIIITTRDAAVLDNHDIEIKKYKMEELNDSDSLELFSWNAFDMSRPLEKFEDISHCAVSYAKGIPLALRVIGSNLKGRRIEEWEIELGKYRKVPHADIQSVLEISYYSLSELERKIFLDIACFFKGEKWVYVERILEACDFYPTFRVFDSKCLITIDENGCLEMHDLIRDMGREIVRKESPSSPGNRSRLWSHKDVLQVLKENSGSIKIEGIMLHPPTHEEIDNWSNTAFKKMKNLRILIVWNAKFSTGPSYLPNSLRLLDWTGFPSQSFPPEFYPERIVDFKLSHSPLIFAELLQIFKDLTFINLSQCQSITQIPNLSGAKNLRVLTLHRCHKLEGFDKSIGLYMSNLVYLSASECTMLKSFVPKMYFPSLEVLSFNFCTRLEHFPDVMRRMDKPLKIHLINTAIKEFPESIGKLTGLEYVDMSTCEGLRDLSRSFLLLPKLVTLKVDGCYQLGESFKRFKESHLIANGCPNLKALCFSKANLSSEDLHIILEIFPNLEYLNVSHNGLVSLPECIKISSQLKSLDISCCRNLLEIPELPLSIQSIDARHCQSLIPKALNVLWSKVCEETERIQVVMPKTEIPNWFDCVGSEDTPLFWARGKFPIVALTFVFSEMKMDRSEFFPGVVSAESHKVVLHLFIDNKEICHKDYHCCSVGEHHVLLCDLRVLFNKEEWQGLDACIGDDWKAVQVQCESHLAMSHWGVYVYKQKTNMDNILFSFPNSTDPMSSSSLVPNKTPHIQHLDLVEAFGQYLHTFKLEQFASVANELLRWWRNTDAGVSEEASALVYGTSLMQEHEEFVWHVSRILEMLMEITPKRIDDSKFQSAGQLVVELLMARAQPMKKKGHETLHINVSMPIILEECEYHPCTDLTKAPRGRYWGSVVLELEEGDPLVWRIWKSKKAIGKRVSVVLSKCQLASTEGASTSGHGEILEEEFKDPALEKLMRGIEQDAMSLNKSLGKLKATIVPRDVPVSDKYMMETTIIRAQERLGRLGPNFKKTPYGKLRVEHDSQGTIHMQHELGVEHDAQSSTQNKLGPTKILIRWIQSICTPK. 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09795 1365 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 146 IPR035897 -
Seca3g09795 1365 Gene3D - 341 425 IPR042197 -
Seca3g09795 1365 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 855 IPR044974 GO:0006952
Seca3g09795 1365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 435 IPR027417 -
Seca3g09795 1365 SMART till_3 12 144 IPR000157 GO:0007165
Seca3g09795 1365 Gene3D Ribonuclease Inhibitor 714 896 IPR032675 -
Seca3g09795 1365 Gene3D Ribonuclease Inhibitor 533 713 IPR032675 -
Seca3g09795 1365 Gene3D - 169 338 IPR027417 -
Seca3g09795 1365 Pfam NB-ARC domain 185 399 IPR002182 GO:0043531
Seca3g09795 1365 ProSiteProfiles TIR domain profile. 11 170 IPR000157 GO:0007165
Seca3g09795 1365 SUPERFAMILY L domain-like 492 869 - -
Seca3g09795 1365 ProSiteProfiles Leucine-rich repeat profile. 813 834 IPR001611 GO:0005515
Seca3g09795 1365 Pfam TIR domain 13 170 IPR000157 GO:0007165
Seca3g09795 1365 Gene3D - 5 168 IPR035897 -
Seca3g09795 1365 PRINTS Disease resistance protein signature 376 390 - -
Seca3g09795 1365 PRINTS Disease resistance protein signature 832 848 - -
Seca3g09795 1365 PRINTS Disease resistance protein signature 204 219 - -
Seca3g09795 1365 PRINTS Disease resistance protein signature 282 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09795 Seca-Chr3 240504396 240514174 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09795 8 779 WRKY Transcription Factor Family AT4G12020 30.576 2.02e-76 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09795 - - tpra:123920929 1802.72