LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g09794	ATGGCAAATCATGATGCAACAATCTCTGATTTTATTTACGATGTTTTTCTGAGTTTTAGAGGCGATACACGCTATGCATTTACAGATAATCTGTATCGAGCTTTAGTCAGTAAAGGAATTAACGCCTTCAGAGATGATGAGAAACTGAGGATTGGGGATGAAATTAGACCTGCTCTTCTCAAGGCAATTGAAAAATCCAGAATCTCTCTGGTTGTGTTGTGTCAAAACTATGCATCTTCCACTTGGTGTCTTGACGAACTTGTCAAGATCATTGACTGTTATGACAAGGAACGAAAACCTGTTTCCGCAATCTTCTACAAAGTGGAGCCTTCACAAGTTAGGTATCAGAAAAATTCCTATGAAGACGCCATGATTAAACATGAAAAACGGTTCGGACAAGGCTCAGAAAAGGTAAAAGCATGGAGGTCAGCTTTGTCTAGAGTATGCGACCTAAGCGGAGTGCATTGTAAGGAAAAAATGTATGAATCTGAGATTATCAACAAGATTGTCAAAGACACATGTGCTAAATTACCTCTTATGCCTTTACAAATTAAGCATGAAGTAGGACTTGATTATCGTTTTGAAAAGGTGAAATCACTAATAGATGTTGAGTCTAATGGCACCGTTTGCATGCTGGGAATTTATGGAGCTGGTGGACTAGGCAAAACTATATTGGCCTGGGATTTGTATAACAAGATTAGGCATCATTTTGAAGCTGCAAGTTTTCTTCAAAATGTTAGAGAAAAATCAAACAAGAATAGCATTAACGGCCTGGAAAATCTCCAGATGTTACTTTTATCTGAAATGGGGGAGGAGACAGAAATAAAGATAGGCAGTATATTTAGAGGAGGCTGTGAGATAAAACGCAGACTGGGACACAAAAGAATTCTTCTGGTTTTGGATGACATTGATTCGATAAAACAGCTAGAATCACTAGCTGGAGGGCATGATTGGTTTGGTTGTGGTAGCAGGATCATTGTAACAACAAGGGATACAACTGTGCTGGATAAGCATGAGATGGATGGTCTTATCATTAAAAAGTATAAAATGGAGGAGCTAAATGAGTATGAATCTCTTGAACTCTTTTGTTGCCATGCCTTTAATATGAGAGGACCTGCAAAAGACTTTGTAGGTGTTTCTAGTCGTGTAGTGAGTTATGCAAAGGGTTTTCCATTGGCTTTGACAGTGATAGGCTCCAATTTGAAGGGTTTGAGTGTTGAGGAATGGGAAATGGAATTGGAGAAATATAGGAAGATTCCAAATGTTGAAATTCAAGAGGTGCTCAAAATAAGCTACAATAACTTGACAGAGCTGGACCAGAAAATTTTCTTGGATATGGCTTGTTTTTTCAAAGGGGAGAGTTGGGAATATGTTAAAAGGATACTAAAGGCTTGTGATTTCTTCCCAATTATTCGAGTATTTGTCAGTAAATGTCTCATAACTATTGATGAAAATGGCTGCTTGGCGATGCATGATCTAATACAAGACATGGGTAGAGAGATTGTCAGAAAAGAGTCCCCATTAAACCCTGGTGACCGCAGCAGATTATGGTCTCATGAGGAAGTTATCGAAGTACTTAAAGAAAACTCGGGAAGCAGTACAATTGAAGGAATAATGCTTGATCCCCCTAAACATGAAAAGATAGATCATTGGACTACTACTGCCTTCAAGAAGATGAAGAAGCTCAGAATTCTAATTGTTCGGAATACAATATTTTCAAAAGGACCTAAATTTCTGCCAAGTAGTTTACGACTACTTGATTGGAAAGGGTACCCGGCAGAGTCATTTCCATCACATTTTTGTCCCAACAGAATTGTTGACTTCAAGTTACCTCATAGTCTTCTAATATTGGAAAATCCATTTCAAGCTTTTAAGGATTTGACATTCATCAATCTCTCCCAGTGTCAATCCGTGACTCAAATTCCTGATGTATCTGGAGCTAAAAACCTAAGAGTATTGATCACTGATAGATGCCATAAATTGACAAGGTTTGATAAATCTGTTGGGTTTATGCCTAACCTAGTGTATGTAAGTGCTCTGGGCTGCCCTGTGCTGAAAAGTTTTGTGCCAAGAATGTATTTGCCATCTCTCGAAATGCTTTCTTTTAACTTCTGCACAAGACTTGAACACTTCCCGGATGTAATGCAAAAGATGGACAAGCCATTAAAGATTCACATGATAAATACGGCCATTAAGGAGTTTCCAAAGTCCATTGGTAACCTTACTGGACTTGAGTATATAGACTTGTCAATATGCCGAGAACTCAAAGATCTATCAAGTAGCTTCTTATCGTTGCCAAAACTTGTCACATTAAAAATTGATGGATGTTCTCAACTTCGAGAATCGTTTAAAAGGTTCAAAGAGGGTCATTCATTGACAAATAGCTTCCCAAATTTAATGACACTATATTTCAGTGAAGCTAATCTATCAGATGAAGATCTTTATGTAATTCTTGACAAATTTCCAAAATTGGAAAAGTTGAATGTATCACACAACAATTTTGTATCCCTCCCAAATTGCATCAAAGGATCTTTGCACTTGAAAAATCTTGATGTGAGTTATTGCAGGAAGCTTAAAGAAATTCCTCAACTTCCATTAAGTATCCAGAAAGTAAATGCAAGATATTGTCGATCCTTAACTGCAGAAGCATCAGGCGTGCTATGGTCTAAGGTTTCAAAAGAGATTGAAAGAATACAAGTTGTGATGCCGAAAATGGAGATTCCAGAATGGTTTGACTGTGTTTGGAATGAAGGTATTCCACTTTTCTGGGCTCGCCGAAAGTTCCCTGTTGTTGCTTTAGCTTTCATGTTTGGGGAAGTCCGTGAAAATGATGAGATAAAGATGGACATCTTTGGACTCTTACCTGGAATTGATAAGTCCCACATTGTTGGTCTCCACTTGTTTATAGATGGCGTAGAAATATGTCGCAAAGATTACCATTATTGCAGTGTTGGGGAACATCATGTCTTGCTATGTGATCTACGGGTCTTGTTCAATGATGAAGAGTGGCAGGATCTTGATGCATGTATTGGAGATGATTGGAAGGCCATTCAGGTCCAATATGAATCACACATGATTTTAAGGCGTTGGGGAGTTTATGTGTACAAGCAGAAAACAAACACTGATGATATCCTTTTTAGTTTTCCCAATTCTACTAACTACTTGCCATCACCATCATCATGTTTGGTTCAAAAAACAACCCCACAACAATCTGAGCAAAAAACAATACATGAAACAGAAAGATGTAGTTTAAGAGAAATGTTTGGCAAGTATCTACCTCTTATAGAATTAATTGAAAATGGTCGCCTTATAAACGCAATATTGAGGCATTGGTGGGACCTTAAGGCTAATAATAAAGGGGAAGCTTCAGCCTCTGACTACGGTGCAAGCTTAAAGCAGGAACATGAGGACTCTGTTTGGGATGTGGTACAGTATTTAGATGTGCTCAAGGAGAATGTGCCAAACCATATCACTGCTTCTTACCCTGAATATATACAAATTGCTAGCCAATGTTTGGAAGAATTGCTGAGGTCACGGGTGGATTATTTGAAAGATATAGGCGAGGGGAGGTTGGATATTGGTATGCACATTATTTTAGAACAATGTCATTTTGGTGAAGCTCCAAGCCGTCGTTATTGGGGAACCTTGAAGATGAAGCATGGAGATGCAGCGTTTGAAGCAATGTTAAAGAAGATAAGCCAACTTTCATGGGAATTTTGGAACATTAATGAAGTTGTTCAAGCCAAGGTATACATTGTTCTATTGAAATGTCAATGTCCATCTACAGAGGAAGCCTCGACCTCTAGCCATGGGGAATCCATGGAAGAAGAATTCTATGATCCTGCATTGCAAGCATTAATGAGGAGGGTAGAGGAAGATGTTATGAGGTTGAATAAAACTTGTGGGAATTTGAAGGCATGTATTGTTCTAACGGATACCCCGGTTTCTGACAAATATCTCATTGAAACAATCATCATCAGGGTACTAGAAAAAGTGGGATGGATGGGAATTATTCTCAAGAAAACGCCTTATGGGAAGCTAAGGGTGGAGCACGCTCTTTGGCGCTTTGCTTTGACACAGTTTGTGTTGTTTTGTCAGCTTATGTTTTGTTTATTTGTTCTCATAATCTTTTATTTATTTAATTGGTTTTGA	4152	0.3829	MANHDATISDFIYDVFLSFRGDTRYAFTDNLYRALVSKGINAFRDDEKLRIGDEIRPALLKAIEKSRISLVVLCQNYASSTWCLDELVKIIDCYDKERKPVSAIFYKVEPSQVRYQKNSYEDAMIKHEKRFGQGSEKVKAWRSALSRVCDLSGVHCKEKMYESEIINKIVKDTCAKLPLMPLQIKHEVGLDYRFEKVKSLIDVESNGTVCMLGIYGAGGLGKTILAWDLYNKIRHHFEAASFLQNVREKSNKNSINGLENLQMLLLSEMGEETEIKIGSIFRGGCEIKRRLGHKRILLVLDDIDSIKQLESLAGGHDWFGCGSRIIVTTRDTTVLDKHEMDGLIIKKYKMEELNEYESLELFCCHAFNMRGPAKDFVGVSSRVVSYAKGFPLALTVIGSNLKGLSVEEWEMELEKYRKIPNVEIQEVLKISYNNLTELDQKIFLDMACFFKGESWEYVKRILKACDFFPIIRVFVSKCLITIDENGCLAMHDLIQDMGREIVRKESPLNPGDRSRLWSHEEVIEVLKENSGSSTIEGIMLDPPKHEKIDHWTTTAFKKMKKLRILIVRNTIFSKGPKFLPSSLRLLDWKGYPAESFPSHFCPNRIVDFKLPHSLLILENPFQAFKDLTFINLSQCQSVTQIPDVSGAKNLRVLITDRCHKLTRFDKSVGFMPNLVYVSALGCPVLKSFVPRMYLPSLEMLSFNFCTRLEHFPDVMQKMDKPLKIHMINTAIKEFPKSIGNLTGLEYIDLSICRELKDLSSSFLSLPKLVTLKIDGCSQLRESFKRFKEGHSLTNSFPNLMTLYFSEANLSDEDLYVILDKFPKLEKLNVSHNNFVSLPNCIKGSLHLKNLDVSYCRKLKEIPQLPLSIQKVNARYCRSLTAEASGVLWSKVSKEIERIQVVMPKMEIPEWFDCVWNEGIPLFWARRKFPVVALAFMFGEVRENDEIKMDIFGLLPGIDKSHIVGLHLFIDGVEICRKDYHYCSVGEHHVLLCDLRVLFNDEEWQDLDACIGDDWKAIQVQYESHMILRRWGVYVYKQKTNTDDILFSFPNSTNYLPSPSSCLVQKTTPQQSEQKTIHETERCSLREMFGKYLPLIELIENGRLINAILRHWWDLKANNKGEASASDYGASLKQEHEDSVWDVVQYLDVLKENVPNHITASYPEYIQIASQCLEELLRSRVDYLKDIGEGRLDIGMHIILEQCHFGEAPSRRYWGTLKMKHGDAAFEAMLKKISQLSWEFWNINEVVQAKVYIVLLKCQCPSTEEASTSSHGESMEEEFYDPALQALMRRVEEDVMRLNKTCGNLKACIVLTDTPVSDKYLIETIIIRVLEKVGWMGIILKKTPYGKLRVEHALWRFALTQFVLFCQLMFCLFVLIIFYLFNWF.	1384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g09794	1383	FunFam	Disease resistance protein (TIR-NBS-LRR class)	10	178	-	-
	Seca3g09794	1383	Gene3D	-	352	436	IPR042197	-
	Seca3g09794	1383	SMART	till_3	12	151	IPR000157	GO:0007165
	Seca3g09794	1383	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	759	IPR044974	GO:0006952
	Seca3g09794	1383	Pfam	TIR domain	13	182	IPR000157	GO:0007165
	Seca3g09794	1383	SUPERFAMILY	L domain-like	546	925	-	-
	Seca3g09794	1383	Gene3D	-	180	345	IPR027417	-
	Seca3g09794	1383	Gene3D	-	8	179	IPR035897	-
	Seca3g09794	1383	Gene3D	Ribonuclease Inhibitor	725	888	IPR032675	-
	Seca3g09794	1383	Gene3D	Ribonuclease Inhibitor	544	724	IPR032675	-
	Seca3g09794	1383	PRINTS	Disease resistance protein signature	211	226	-	-
	Seca3g09794	1383	PRINTS	Disease resistance protein signature	290	304	-	-
	Seca3g09794	1383	PRINTS	Disease resistance protein signature	739	755	-	-
	Seca3g09794	1383	PRINTS	Disease resistance protein signature	387	401	-	-
	Seca3g09794	1383	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	153	IPR035897	-
	Seca3g09794	1383	Pfam	NB-ARC domain	193	436	IPR002182	GO:0043531
	Seca3g09794	1383	ProSiteProfiles	TIR domain profile.	11	177	IPR000157	GO:0007165
	Seca3g09794	1383	SUPERFAMILY	"Winged helix" DNA-binding domain	423	527	IPR036390	-
	Seca3g09794	1383	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	180	445	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g09794	Seca-Chr3	240497416	240502798	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g09794	13	787	WRKY Transcription Factor Family	AT4G12020	29.963	2.51e-77	281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g09794	-		-	tpra:123920924	1675.99