Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09777 ATGCAATACACACAGCTCTTTTGTTTCATTTTAATGTTGCTAGTCCTTGCTTTTGATGGTAGTGAATCCCAGAATTGTAGCTACCCACTCAAGACCATTACCGTTAGTCAATCAGGCAATGCAGATTTCAAAACAATTAAAAGTGCCCTTGACTCTGTCCCTAAGAAAAACCCTCATTATTGGATTCACATCCAAATTTCACCGGGTGTTTACAGGGAGCATATCGATATTCCGGTGAATAGACCATGCATTTATCTTGAAGGAGCTGGTAGAGACTCCACAAGTATCGAATGGAGTGATCATTCGGTTGCTACTTTTTTTACGAGGGCAAGTAATATTGTTGCAAAAGGCATTACTTTCATGAATACACTCAACAACCCTGTAACATTAAATGAAAGTAGCAACATCACCCAAGCCTTGGCTGCACGGATCCATGGAGATAAATGTGCTTTCTTTGATTGTGCTTTTCTAGGGGTGCAAGATACCCTATGTGATGATTATGGCCGCCATTACTATCATAATTGCTACATTCAAGGTGGAGTTGATTTCATTTATGGGAATGGTCAATCAATCTTTGAGGCAAGTACAATATATTTTTCAATGGGGAATTCTGGTTCCAAAATTGATGGGTTTATTACAGCACAAGAAAGGGAATCACCAGATAAAAACACTGGGTTTGTGATTAAAAATTGTATCATAAACGGAACAGGGGGAAAGGCAGAACTTGGGAGAGCTTTGACTGCTTATTCCAGAGTCATCATAGCCAATTCATTCCTAACAGATGTGGTTAAACCTGAGGGATGGAGTCAAACGAAATATGTTGGGCATGAAGCAAACATCACATATGTGGAAGAGGGATGCAGAGGACCAGGAGCAAACAAATCAAAGCGTGTGAAATGGATGAAGAGTTTGAGTGGACCCGAGCTTCAAAAATTCTTGGATATCTCTTATATTGATAGTGAAGGGTGGATTGACAAACTCCCAACAAAAATATCATTTGAATGA 1005 0.395 MQYTQLFCFILMLLVLAFDGSESQNCSYPLKTITVSQSGNADFKTIKSALDSVPKKNPHYWIHIQISPGVYREHIDIPVNRPCIYLEGAGRDSTSIEWSDHSVATFFTRASNIVAKGITFMNTLNNPVTLNESSNITQALAARIHGDKCAFFDCAFLGVQDTLCDDYGRHYYHNCYIQGGVDFIYGNGQSIFEASTIYFSMGNSGSKIDGFITAQERESPDKNTGFVIKNCIINGTGGKAELGRALTAYSRVIIANSFLTDVVKPEGWSQTKYVGHEANITYVEEGCRGPGANKSKRVKWMKSLSGPELQKFLDISYIDSEGWIDKLPTKISFE. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09777 334 Pfam Pectinesterase 33 317 IPR000070 GO:0030599|GO:0042545
Seca3g09777 334 SUPERFAMILY Pectin lyase-like 31 331 IPR011050 -
Seca3g09777 334 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 20 325 - -
Seca3g09777 334 FunFam Pectinesterase 28 328 - -
Seca3g09777 334 Gene3D - 29 333 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09777 Seca-Chr3 240268043 240270174 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09777 29 324 Carbohydrate Esterase AT1G05310 40.575 7.35e-67 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09777 - - mtr:25501033 470.314