Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09775 ATGAGTGTTGTGTATAGTCATGCTCTCAAGTACTCTGAAGGTGAGGCAATGAGGAACCAAGAAATGGATTCAAGTTTTGGTTTCCCACAACAAAATTGTCACCAGCAAAATTCTGGACTATTGCGGTTACGTTCTGCTCCAAGCTCATTGCTGACAAACCTTGTGGATAACACTAACAGCATTGGCTGTGTCAATTTGGAAGCTTTCAGAAATGAGGATCATCAGCATTATCTTTCTCCAACTTCAGAAATGGAAACCATGTTGGCCAAATTGATTTCATCCAACAATGGGTTGACCAATTCAGAATCTTTGCAAGAGTTTGGAGACAAGCCTGTAGTGAAGCAAGAAGAAATGGACCTTGTTTCACAGGAACCACAACAGAATGGTTACTCTTATGCATCCCCAGATCAGTTAATTTACCAACAACCTCAGCAAATTCAAGGCTTGCCAAATGATTCTTTAGGTGCTGCAGGGAATAATTTTGATAGCTCATTCAATTCAGTGAGTTCCCTGGCTTCAGAGAATTACACACAAACTAAAATGGGTTCTAGCAATTGCTCCAATCTCATTAGGCAAAAGAGCTCCCCTGCTGGATTTTTCTCCAATTATTCAGTTGATAATGGTCTTGCATCAATGAGAGAGGTAGGAAGTTTTAGAGGCTCTGATGTCTCAAATGGACAAGCTACTACATCATCTAGTGGATTGCATGGTACCTTGAACTTCTCATCTAGGCCATCCTCTTGCTCCAGCAGAATGCCACAGATTGTTGAGAGTGAACATGAAAGCCTGCAAGCAAATTGTGTTGAAAGTAGGAACCTGGGAAACAGCTTCACCAGTGACTTCTGGGATGGTTCTGCATTCAATGCCCCCAAAACAGCCAGAAACAATGGTGAAATCATGTTTACCACTTCAAATGGTTTGGACACTCAGGATGTAGACTTTGGATATCAAAAACTTGGTTTGAGCCACCATTTGAGTCTGCCTAGCTCTTCTAGGATACAGAAGCTTTATCAAATTCAAGGATCTGTTCCATGTAAAATTCGAGCTAAAAGAGGCTTTGCCACTCATCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACTAGAATTAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATTTGTTGGATTTTGCAGTTGATTATATTAAAGACCTGCAGAAACAAGTCAAGACACTCACAGAAACTAGGGCAAAGTGCACTTGTACAAGTAAATAG 1269 0.409 MSVVYSHALKYSEGEAMRNQEMDSSFGFPQQNCHQQNSGLLRLRSAPSSLLTNLVDNTNSIGCVNLEAFRNEDHQHYLSPTSEMETMLAKLISSNNGLTNSESLQEFGDKPVVKQEEMDLVSQEPQQNGYSYASPDQLIYQQPQQIQGLPNDSLGAAGNNFDSSFNSVSSLASENYTQTKMGSSNCSNLIRQKSSPAGFFSNYSVDNGLASMREVGSFRGSDVSNGQATTSSSGLHGTLNFSSRPSSCSSRMPQIVESEHESLQANCVESRNLGNSFTSDFWDGSAFNAPKTARNNGEIMFTTSNGLDTQDVDFGYQKLGLSHHLSLPSSSRIQKLYQIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADLLDFAVDYIKDLQKQVKTLTETRAKCTCTSK. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09775 422 SMART finulus 359 409 IPR011598 GO:0046983
Seca3g09775 422 Gene3D - 355 420 IPR036638 GO:0046983
Seca3g09775 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 356 415 IPR036638 GO:0046983
Seca3g09775 422 FunFam Transcription factor bHLH130 family 354 422 - -
Seca3g09775 422 Pfam Helix-loop-helix DNA-binding domain 359 404 IPR011598 GO:0046983
Seca3g09775 422 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 414 - -
Seca3g09775 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 403 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09775 Seca-Chr3 240245577 240248928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09775 30 421 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 35.323 3.55e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g09775 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09775 - - gmx:100795896 534.258