Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09770 ATGGCTCACGAGATTAAAAAAGAAGAAACCGAATTCAAGGTTCCCGAAACCATCAACCCATGCAGCAACCCCACTGCCACCACCACCACCCCCACAACCTCCACAATTACAGAACCTTCCAGATTTTTTGACGATAAGGCCACCGCCAGATCCGCCACGTCATCACGCTCCCCCAAGAGATCTCACCCTCCAGACGACGAACAAGAAGGCCTTGCTCAAACGACGCCGTCCGAGGCCAAACGCGCCGTCAACCGCTGCTCCGGCTGTCGGAAGAGGGTTGGTCTCACCGGATTTCGGTGCCGCTGCGGCGACCTATTCTGCGCCGAGCACCGCTACTCCGACCGCCACGACTGCACCTACGATTACAAATCCGCCGGACGAGAGGCCATCGCCAGGGAAAATCCGGTCGTCAAAGCCGCGAAGATCGTCAAATTCTAA 438 0.5708 MAHEIKKEETEFKVPETINPCSNPTATTTTPTTSTITEPSRFFDDKATARSATSSRSPKRSHPPDDEQEGLAQTTPSEAKRAVNRCSGCRKRVGLTGFRCRCGDLFCAEHRYSDRHDCTYDYKSAGREAIARENPVVKAAKIVKF. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09770 145 Gene3D - 49 141 IPR035896 -
Seca3g09770 145 MobiDBLite consensus disorder prediction 1 79 - -
Seca3g09770 145 SMART AN1_Zf_4 86 123 IPR000058 GO:0008270
Seca3g09770 145 ProSiteProfiles Zinc finger AN1-type profile. 80 126 IPR000058 GO:0008270
Seca3g09770 145 Pfam AN1-like Zinc finger 86 123 IPR000058 GO:0008270
Seca3g09770 145 FunFam Zinc finger AN1-type containing 6 56 141 - -
Seca3g09770 145 PANTHER AN1-TYPE ZINC FINGER PROTEIN 15 144 - -
Seca3g09770 145 MobiDBLite consensus disorder prediction 16 58 - -
Seca3g09770 145 SUPERFAMILY AN1-like Zinc finger 72 139 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09770 Seca-Chr3 240154252 240154689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09770 74 145 C2H2 Transcription Factor Family AT3G52800 61.111 2.81e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09770 - - lja:Lj3g3v0478150.1 214.157