Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09758 ATGGTTTTCTTCCATTTGATGCAGGGAGGTCGAATAGAAGCAACTATTGACAAGCAGTTGATAAGGAAATTTGATAGCTCAGTGGTAGAGGGGGAGGTGTATAAGCTAACCGATTTTGCGCTCGCCAGGAATTTGGGGAAGTTTAAAGCAACAACTCACGATTACAAAATAACGTTTAATCCTCACACCAAACTGATACCAACTCCAGCTTCAACCATTCCATTCCATGGGTTGTCATTGCTTAAGACGTCCGATATAATCAAAACAAACGGCCAATCAAACAACCTCTTGGATTTTATGGGCGTCCTCACAGCTGTCTCGGATGAGATGACTTTGACTTCAAGGGATGGACGACAAATTCGACTGATGCAGTTAGAATTGGTTGATGAAATGGGGGAGATTAAATGTGCAATCTTCGGAGATTTCATTGGTGTTTTCATTGGCTTCCTTGATTTGCCTCGGGCAGGTCTGCCCGTAGTGATTCTTCAGCTTGTCAGGGTTAACAACTATAAAGTCATTTGTTTTGGGATGAACATTGTTGGGCTAAGCAAGCTGGCCTTCCACGAGGCGGAGTCTGATCTCAAGATTGGGATTGGGATGCTACCTAAAAGTAAAACCATTGTCCCTATGTGTGATGATTTTTTCAAGTTACATCCAAGGAAGACTTTGTGCCAATTAATTGACACTGAGGAGGAAGGTTATTTCATAACAATTGGAACAATTTCTGAGATTTGTGATGATCATCCTTGGTGGTACATGGCCTGCAGCTGTATGAGATATGTAACACAGCTAGGAGTTACATATTTCTGCAAGGATTGTAACCTTCATATGTTTAATGCTAAGCCCAAGTATAAGCTAAAGTTGATGGTTAGCGATGGAGAAGATTCTGCGAGGCTTGTGCTTTTTGATGATGAGGCATTCGCCCTTATCAATAGGTCTTGTGAGGACATGGTCATACGGTCAAAGGTGGAAGCAGACTGTGACGTTCCTGAGGAAATATCTATGTTGGTTGGGAAGGAACTTCTTTTCAAGGTAGAAAAGACTACTGCAGCATATACCAATTTTGATGGTTCTCTCAAAGTTAAGAGAGTGTGCTCGGATCCTCTTTTCATTCATGAGTACAAGGATACCTTGTGTGAGAACACACCATTAAAGCAAAAGTTTGCACCCTTCTTCCCAAAGCTTGGCAATGGAGAGGGGAGTAGTGGCAGCAAGGAGATCAAAACAGAATGTACTTCAGCCATTACAGAGATTGATGTGAGCCCATTGTCTTGTGGTCAACCCTCTATGACACCTGAGGCGGAATCTGTTGTTTCTAAGAGGGGAGTCGCTCCAACTGTTGAAGCTATACCCGAACGCAAAAAAAGGGCAAAGGTGAAGTCGGCTAAGTTCGAGTAA 1398 0.4278 MVFFHLMQGGRIEATIDKQLIRKFDSSVVEGEVYKLTDFALARNLGKFKATTHDYKITFNPHTKLIPTPASTIPFHGLSLLKTSDIIKTNGQSNNLLDFMGVLTAVSDEMTLTSRDGRQIRLMQLELVDEMGEIKCAIFGDFIGVFIGFLDLPRAGLPVVILQLVRVNNYKVICFGMNIVGLSKLAFHEAESDLKIGIGMLPKSKTIVPMCDDFFKLHPRKTLCQLIDTEEEGYFITIGTISEICDDHPWWYMACSCMRYVTQLGVTYFCKDCNLHMFNAKPKYKLKLMVSDGEDSARLVLFDDEAFALINRSCEDMVIRSKVEADCDVPEEISMLVGKELLFKVEKTTAAYTNFDGSLKVKRVCSDPLFIHEYKDTLCENTPLKQKFAPFFPKLGNGEGSSGSKEIKTECTSAITEIDVSPLSCGQPSMTPEAESVVSKRGVAPTVEAIPERKKRAKVKSAKFE. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09758 465 Pfam Replication factor-A C terminal domain 234 353 IPR013955 -
Seca3g09758 465 CDD RPA1_DBD_C 225 381 IPR047192 -
Seca3g09758 465 PANTHER OS03G0429900 PROTEIN 234 441 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca3g09758 465 Gene3D - 6 69 IPR012340 -
Seca3g09758 465 SUPERFAMILY Nucleic acid-binding proteins 218 353 IPR012340 -
Seca3g09758 465 SUPERFAMILY Nucleic acid-binding proteins 9 69 IPR012340 -
Seca3g09758 465 SUPERFAMILY Nucleic acid-binding proteins 79 146 IPR012340 -
Seca3g09758 465 Gene3D - 215 380 IPR012340 -
Seca3g09758 465 Pfam Domain of unknown function DUF223 8 74 IPR003871 -
Seca3g09758 465 Gene3D - 72 192 IPR012340 -
Seca3g09758 465 CDD RPA1_DBD_A_like 8 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09758 Seca-Chr3 239963082 239966253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09758 8 317 Core DNA Replication Machinery Family AT5G08020 24.779 7.84e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09758 - - lja:Lj6g3v0884310.1 241.891