Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09754 ATGCCAAGAAAGGAAAGAAAAAATGCATTATATATAAAGTATAAACGTGTCATCACATTCCACTTACAAAGAAAGGAAAGTTGTGAAGACAAACGTGTGGTGAAGAAAATGTACTTAGTCCATACTCCACATATTTCTCACTTTTCCTTTCCCATTGGTCGAGTAACTGCATATACCAGTTATCAGAGCAAGAGAGAAGGTGTGAGAAAAATGGAAGAAAGCAAAGGAAGAGTGTGTGTTACAGGAGGTACAGGGTTTATTGGTTCATGGATGATCAAGAGGCTCCTTGAAGATGGTTATTGTGTCAATACCACCATGAGACCTGACCCAGAACACAAGAAAGATGTTAGCTTTCTTACCAACTTACCTGGAGCATCCCAAAGGCTACAAATTCTCAGTGCAGATCTCAGCAATCCAGAAAGTTTCAGTGCAGCCATTGAAGGGTGCATTGGTGTTTTCCATGTTGCTACCCCAATTGACTTTGAGTTAAGAGAACCTGAGGAAGTAGTGACCAAAAGATCCATTGATGGTGCACTAGGCATTTTGAAGGCTAGTCTCAATTCCAAGACTGTGAAGAGAGTTGTTTACACTTTTAGTGCCTCTGCTGTGGTTTCCAGTGGTAAAGAAGATGAAGTGAAGGATGAAAGTTTTTGGAGCGATGTGGATTATCTTAGAGCTTCAAAGCCATTTGGTTGGTCTTATGCAGTTTGTAAGACATTGACAGAAAAGGCAGTGCTTGAATTTGGAGAACAGAATGGATTGGATGTTGTGACAATAGTTCCTACTTTTGTTCTTGGACCCTTTATTTGTCCAAAGCTTCCTAGCTCTGTCCGTGCTTCATTGGATTTCGCATTTGGGCAGAAAGGTGAATTTGGTTACATCCTTCAGACACCTATGGTGCATGTGGATGATGTGGCTAGGGCGCATATATTTCTGCTTGAACATACTAATCCACATGGGAGGTATAATTGTTCATCATGTTTGGTAACTGTTGAAAAGATGTCTGATCTTGTGTCTACCAAATACCCAGAATTTCAACTGCAAACAGTGGATAGCTTTTCCAAGCAAATTGAAGGTTTCAAGGCACCAGATGTATCCTCAAAGAAGCTAATGGATGCAGGATTTTTGTTCAAGTATGGACTTGAGGAAATGGTTGATGATGCAATTCAATGCTGCAAGAGAAAGGGTTACCTGCAAGGGGGTTGTGCCCCCTTTTTTGTATCATAG 1227 0.4075 MPRKERKNALYIKYKRVITFHLQRKESCEDKRVVKKMYLVHTPHISHFSFPIGRVTAYTSYQSKREGVRKMEESKGRVCVTGGTGFIGSWMIKRLLEDGYCVNTTMRPDPEHKKDVSFLTNLPGASQRLQILSADLSNPESFSAAIEGCIGVFHVATPIDFELREPEEVVTKRSIDGALGILKASLNSKTVKRVVYTFSASAVVSSGKEDEVKDESFWSDVDYLRASKPFGWSYAVCKTLTEKAVLEFGEQNGLDVVTIVPTFVLGPFICPKLPSSVRASLDFAFGQKGEFGYILQTPMVHVDDVARAHIFLLEHTNPHGRYNCSSCLVTVEKMSDLVSTKYPEFQLQTVDSFSKQIEGFKAPDVSSKKLMDAGFLFKYGLEEMVDDAIQCCKRKGYLQGGCAPFFVS. 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09754 408 Gene3D - 75 398 - -
Seca3g09754 408 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 75 389 - -
Seca3g09754 408 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 73 392 IPR036291 -
Seca3g09754 408 CDD FR_SDR_e 78 375 - -
Seca3g09754 408 FunFam Dihydroflavonol reductase 75 400 - -
Seca3g09754 408 Pfam NAD dependent epimerase/dehydratase family 78 324 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09754 Seca-Chr3 239897626 239899998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09754 74 398 Monolignol Biosynthesis Gene Families AT2G02400 35.629 7.11e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09754 - K13265 gmx:100796029 551.977