Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09752 ATGACAGATCCTCAATCCAATTTATTTGATGAATGGTTCAACTTCATGCTTCTCCACCCTCACCACTCTTCTTCTTCTCAATCCAACAATATGTGTTCATCATCTTCATCTTCAATATCATACCCTTTTCCTTACTCAAACAACAACAACAGGTTTGGATTAATTCAATCTGAAGCCTCATCCTCCTCTGCTGCAGCTCCACCTTCTTCCCCTCCTCTCAGAGAGGCTCTTCCTCTCATTAACAAGCTAACCCTCAAAAATCAACATGATCAAAATGAACCCTCAAACAGTAATAGAACAATAGAAGAGGCTTTGACTGGTACTGATCAAGAAGAGGATGATGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCTAGAATGAGTAGTGGTGGTACTTCCTCTGATTTGGGGTCAAGGAATATGGTCTCAATCTCAACTTCTTCAATAGAAAAAGAGACCATTTCTGAACAACCCTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCAACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTTTCATGTCCTGTATGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAGGGCCCTGATTCTCTAAAAGGAACACAACCAACAGCTATGTTAAGGCTTCCATGCTATTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTACAAACACATTATAAGAGAAAGCATGGCATAAAACCCTATATGTGCAGAAAATGTGGCAAAGCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGCAAAATATGGTATTGTTTATGTGGGTCAGATTTCAAACACAAAAGGTCTCTAAAAGACCACATCAAAGCCTTTGGCTATGGCCATGGAGCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCAACCTCAGAAATTGAACATGATGGTGAAGGCTCATTGTGA 1035 0.4097 MTDPQSNLFDEWFNFMLLHPHHSSSSQSNNMCSSSSSSISYPFPYSNNNNRFGLIQSEASSSSAAAPPSSPPLREALPLINKLTLKNQHDQNEPSNSNRTIEEALTGTDQEEDDETVTVALHIGLPRMSSGGTSSDLGSRNMVSISTSSIEKETISEQPLDRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCYCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEATSEIEHDGEGSL. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09752 344 SMART c2h2final6 267 287 IPR013087 -
Seca3g09752 344 SMART c2h2final6 183 205 IPR013087 -
Seca3g09752 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 287 IPR013087 -
Seca3g09752 344 FunFam Zinc finger protein WIP2 236 318 - -
Seca3g09752 344 SUPERFAMILY beta-beta-alpha zinc fingers 251 287 IPR036236 -
Seca3g09752 344 SUPERFAMILY beta-beta-alpha zinc fingers 179 205 IPR036236 -
Seca3g09752 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Seca3g09752 344 PANTHER ZINC FINGER PROTEIN WIP2 27 337 IPR043584 GO:0003700|GO:0010468
Seca3g09752 344 Gene3D Classic Zinc Finger 246 316 - -
Seca3g09752 344 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Seca3g09752 344 Gene3D Classic Zinc Finger 182 205 - -
Seca3g09752 344 FunFam zinc finger protein WIP2-like 182 205 - -
Seca3g09752 344 Pfam Zinc finger, C2H2 type 183 202 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09752 Seca-Chr3 239888932 239891064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09752 1 337 C2H2 Transcription Factor Family AT3G57670 53.806 8.30e-128 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g09752 zf-C2H2_6 9.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09752 - - gmx:100794446 525.013