Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09749 ATGAATGATGGTAGACAAATGGGGGTGCATTACATGGATGCTGGCTTTCCTTATGCTGTTAATGAAAACTACGTCGATTTCTTTCATGTGCCGGTGAATTATGCCTTTGCTGGCTCAATGCCTGATCAGGAAAGTGTGTACTGGTCAATGAACATGAATCCCTATAAGTTTGGAGTATCTGGCCCTGGGAGTACATCTTATTACAGTTCTTATGAGGTAAATGATCATTTGCCAAGAATGGAGATCAACAGGACTGAGTGGGAATACCCTTCAGTAATGACCACTGAGGAACCTGCCACAACAGATTCTCCACCTAGAAGAGATGGAGCCACTAGCATGCAGACTATCCCTGAAGAATGCAGTCCAAATCATCATGAGTCCAGTAGTAGCCAGGTCATATGGCAAGATGACATCGATCCTGATAATATGACTTATGAGGAACTACTGGACCTGGGGGAGGCAGTTGGAACTCAAAGCCGAGGTCTTTCCCAAGAACTTATTGATATGCTTCCAACCTCAAAGTATAAATTTGGTAGCTTATTCAAAAGAAAAAATTCTGGGAAAAGGTGTGTAATTTGTCAGATGTCATATAGAAGAGGTGACCAGCAAATAAAATTGCCATGCAGCCATGTTTATCACAGTGAATGCATTACCAAATGGCTTGGCATTAACAAGAAATGTCCTGTTTGCAACATTGAGGTTTTTGGTGAGGACTCAACGCATTAG 726 0.4201 MNDGRQMGVHYMDAGFPYAVNENYVDFFHVPVNYAFAGSMPDQESVYWSMNMNPYKFGVSGPGSTSYYSSYEVNDHLPRMEINRTEWEYPSVMTTEEPATTDSPPRRDGATSMQTIPEECSPNHHESSSSQVIWQDDIDPDNMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGSLFKRKNSGKRCVICQMSYRRGDQQIKLPCSHVYHSECITKWLGINKKCPVCNIEVFGEDSTH. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09749 241 SUPERFAMILY RING/U-box 189 235 - -
Seca3g09749 241 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 237 IPR033276 GO:0004842|GO:0016567|GO:0046621
Seca3g09749 241 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Seca3g09749 241 MobiDBLite consensus disorder prediction 94 131 - -
Seca3g09749 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 235 IPR013083 -
Seca3g09749 241 Pfam Ring finger domain 189 231 IPR001841 -
Seca3g09749 241 SMART ring_2 190 230 IPR001841 -
Seca3g09749 241 FunFam E3 ubiquitin ligase BIG BROTHER 152 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09749 Seca-Chr3 239815645 239821714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09749 9 241 C3H Transcription Factor Family AT3G63530 57.563 1.49e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09749 K19045 - gmx:100792734 457.603