Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09744 ATGAAGACGCTAACTATTAATACTGAAGATTCTTTTTCCAGTTTACTGGAACTTGCCTCTAACAATGATATTGAAGGTTTTAAGCTGCTTTTAGATAAGGAAGGTTCTTCAATTAATGAAGTTGGGCTCTGGTATGGTAGGCAAAATGGATCCAAACAAATTGTTCTTGAGCATAGAACTCCTTTGATGGTTGCTGCTACCTATGGTAGTATTGATGTTCTGAAGCTTATACTTTCGCGTCCAGAAGCGGATGTGAATTTCGCATGTGGGGTGAATAAAAGCACTGCCCTTCACTGTGCCGCCTCTGGTGGGTCTGTTAATGCAGTTGATGCTGTGAAGCTTCTTTTGTCTGGTGGTGCTGATCCCAACTGCGTTGATGCCAATGGGAACCGTCCTGTTGATGTCATTGTTGTTCCTCCCAGGCTGCATGGCATGAAAGCAATTCTTGAGGAACTCCTTTCAGACAGTGCTTCTGATGGTTCTGTTTGTGACTTGTCTGTTCCGGTGTCTGTTAATTCTTGTAGTCCTGGTTCACCTGCCCATTTATCATCACTTGAAAATGGGATGCCATACTCTCCTTCAAGCTCACCGCCTTCTCCTGTGGCTTCAAAGTTTACTGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATAAAAAACAGCATATATGCAACTGATGAATTTAGGATGTTTTCATTCAAGGTCCGCCCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCATTTGTTCATCCTGGAGAGAATGCTCGGAGGAGAGACCCCAGAAAGTTTCATTACAGCTGTGTGCCATGCCCTGATTTTAGGAAAGGGGCTTGTAGACGTGGAGATATGTGTGAATATGCTCATGGAGTATTTGAATGCTGGCTACACCCAGCTCAGTATCGAACACGCCTCTGTAAAGATGGCACTAGTTGCAATAGAAGGGTGTGTTTTTTTGCTCACACTGCAGAGGAATTGCGGCCACTATATGTGTCCACTGGATCTGCTGTACCCTCGCCACGGTCATCTGCCTCTGCACCTAATGTCATGGACATGGCTGCTGCAATGAGTCTTTTGCCTGGTTCACCTTCGTCAGTCTCTTCCATGTCTCCATCCCATTTTGCCCAGCCGATGTCCCCATCTGCAAATGGCATCCCACTCTCATCTGCTGCTTGGGCACAGCCTAATGTGCCAGCCCTTCATTTACCAGGAAGCAATCTTCAATCTAGTCGCCTGAGGTCTTCTCTTAGTGCTCGTGACATTCCACCTGAAGACTTGAATGTGTTGTCTGATTTTGATGGTCAGCAACACATTATGAATGATTTGAGCTGTTTCTTACAGTCCCGTCCAGGTGCCACTTCAGTTGGTCGATCCTGTCGACCTAAGACACTAACTCCTTCAAATCTGGAAGAGCTCTTTTCTGCTGAAATTTCTTCATCTCCCCGGTATTCCGACCCAGCTGCCGCTTCTGTTTTCTCCCCTACACACAAATCAGCTGTTCTAAATCAGTTTCAGCAGGTTCAAAATATGCTATCACCTATAAATACCAATGTGCTGTCTCCGAAGAGTGTTGAGCATCCTCTGTTACAGATGTCACCTAGAAGTGTTGAACCAATCTCCCCAATGAGCTCTCGCATGTCAGCTTTTGCTCAGCGTGAGAAACAGCAGCAACAACTGCGGAGTATTAGTTCTAGGGACCTTGGTGCCAACAACCCTGCCTCAGTTGTTGGCTCCCCTGTAAACACTTGGTCTAAGTGGGGATCTCCTAATGCAAAAGTTGATTGGTCAGTAAGTGGAGATGAATTAGGTCGTCAAATGCGAAGATCATCCTCATTTGAACTTAAAAACAACGGGGAAGAGCCTGATCTATCATGGGTCCAATCACTGGTGAAGGAATCCCCACAGGAGATGATTAAAGAAAAGTTTGGATCTTCTGGCCCTATTGCATCTGCTGATGGACTGAATCCCAATCCCAATTCCCAAATTGAATCCGTTGATCATTCTGTTTTAGGAGCATGGCTTGAGCAAATGCAACTGGATCAGCTCGTAGTCTAG 2067 0.4543 MKTLTINTEDSFSSLLELASNNDIEGFKLLLDKEGSSINEVGLWYGRQNGSKQIVLEHRTPLMVAATYGSIDVLKLILSRPEADVNFACGVNKSTALHCAASGGSVNAVDAVKLLLSGGADPNCVDANGNRPVDVIVVPPRLHGMKAILEELLSDSASDGSVCDLSVPVSVNSCSPGSPAHLSSLENGMPYSPSSSPPSPVASKFTEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLLPGSPSSVSSMSPSHFAQPMSPSANGIPLSSAAWAQPNVPALHLPGSNLQSSRLRSSLSARDIPPEDLNVLSDFDGQQHIMNDLSCFLQSRPGATSVGRSCRPKTLTPSNLEELFSAEISSSPRYSDPAAASVFSPTHKSAVLNQFQQVQNMLSPINTNVLSPKSVEHPLLQMSPRSVEPISPMSSRMSAFAQREKQQQQLRSISSRDLGANNPASVVGSPVNTWSKWGSPNAKVDWSVSGDELGRQMRRSSSFELKNNGEEPDLSWVQSLVKESPQEMIKEKFGSSGPIASADGLNPNPNSQIESVDHSVLGAWLEQMQLDQLVV. 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09744 688 Pfam Ankyrin repeats (3 copies) 19 126 IPR002110 GO:0005515
Seca3g09744 688 FunFam Zinc finger CCCH domain-containing protein 66 227 295 - -
Seca3g09744 688 SMART ANK_2a 92 124 IPR002110 GO:0005515
Seca3g09744 688 SMART ANK_2a 10 40 IPR002110 GO:0005515
Seca3g09744 688 SMART ANK_2a 57 87 IPR002110 GO:0005515
Seca3g09744 688 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Seca3g09744 688 SUPERFAMILY Ankyrin repeat 9 155 IPR036770 -
Seca3g09744 688 ProSiteProfiles Zinc finger C3H1-type profile. 274 296 IPR000571 GO:0046872
Seca3g09744 688 SMART c3hfinal6 304 327 IPR000571 GO:0046872
Seca3g09744 688 SMART c3hfinal6 269 295 IPR000571 GO:0046872
Seca3g09744 688 Gene3D - 269 332 - -
Seca3g09744 688 MobiDBLite consensus disorder prediction 185 202 - -
Seca3g09744 688 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 294 IPR000571 GO:0046872
Seca3g09744 688 MobiDBLite consensus disorder prediction 557 580 - -
Seca3g09744 688 MobiDBLite consensus disorder prediction 185 205 - -
Seca3g09744 688 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Seca3g09744 688 Gene3D - 3 185 IPR036770 -
Seca3g09744 688 PANTHER UNKEMPT FAMILY MEMBER 17 637 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09744 Seca-Chr3 239745407 239747527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09744 9 685 C2H2 Transcription Factor Family AT5G12850 56.000 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g09744 Ank_2 3.3e-11 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09744 - - gmx:100791328 1150.96