Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09739 ATGCCAGGGAAACCTGAAACTGATTATTGGCGAGTAGAGCGTAGTGAGCAGATTCAGTTTCAATCTTCCATTTACTCTCATCAGCCTTGGTGGCGTGGAGTGGGGGAAATTGAGAATGCCTCCAAATCATCTTCAGCTGATCAGCTAAACGGTTCAATCATGAATGGTGTCACACATTCAGAGGTCAATGAAGGGCTGGCTGATGGAATTAATTTCAATAAACAAAGGCAGCCTATGGTTTCTCCTTCACTGTCTGTAACTGATAAGTCAGGTGGGGATGTTGTCAAAGAGCACCAAAACATCAAACATGCCCTGTCCTCAACCCCATTTACCATGGCCAAACACCTTAGTCCAAATTCCCAGATGGAACTTGTTGGTCATTCAATTGTCCTAACATCTCCTTATTCAGATGCACAGTATGGTCGAATCTTGGCTACTTATGGCCAACAAGCTATGATAAACCCTCAGTTGTACGGGATGCATCATGCTAGAATGCTTTTGCCACTTGAAATGGAAGAGGAACCTGTTTATGTCAATGCAAAGCAGTATCACGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCTGAGCTTGAAAAGAAAGTAATTAAAGTTAGAAAGGTAAGATTGATATCTAACTTATTTAGAAAGGTACCACTAGGAGGAAAGGATATACTATCCTGA 684 0.4225 MPGKPETDYWRVERSEQIQFQSSIYSHQPWWRGVGEIENASKSSSADQLNGSIMNGVTHSEVNEGLADGINFNKQRQPMVSPSLSVTDKSGGDVVKEHQNIKHALSSTPFTMAKHLSPNSQMELVGHSIVLTSPYSDAQYGRILATYGQQAMINPQLYGMHHARMLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKVRLISNLFRKVPLGGKDILS. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09739 227 Gene3D - 172 215 - -
Seca3g09739 227 ProSitePatterns NF-YA/HAP2 subunit signature. 177 197 IPR018362 GO:0003677|GO:0016602
Seca3g09739 227 SMART cbf3 171 227 IPR001289 GO:0003700|GO:0006355
Seca3g09739 227 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 207 IPR001289 GO:0003700|GO:0006355
Seca3g09739 227 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 45 210 IPR001289 GO:0003700|GO:0006355
Seca3g09739 227 ProSiteProfiles NF-YA/HAP2 family profile. 172 227 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09739 Seca-Chr3 239671252 239674843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09739 28 210 CCAAT-HAP2 Transcription Factor Family AT5G12840 39.062 6.96e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca3g09739 CBFB_NFYA 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09739 K08064 - gmx:100782085 293.508