Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09734 ATGTACATCAAGGAGGTTTGCTTGGAAGGTTTCAAATCGTACGCGACCCGAACCGTCGTTCCTGGTTTCGATCCCTTCTTCAACGCCATCACCGGGTTGAACGGTTCCGGCAAATCGAACATTCTCGATTCAATTTGCTTCGTCCTCGGCATCACGAACTTGCAGCAGGTTCGGGCTTCCAATCTTCAGGAACTCGTGTACAAGCAAGGCCAAGCTGGAATTACTAAGGCCACTGTGTCGATTGTGTTCGATAATTCGGATAGGAGTCGAAGCCCTCTTGGATATGAAGACCATTCAGAGATTACAGTAACAAGACAGATTGTGGTTGGAGGGAGGAACAAATATTTAATCAATGGGAAACTTGCACAGCCTAGTCAAGTCCAAAACCTTTTCCATTCGGTGCAGCTAAATGTTAACAATCCGCATTTCCTCATAATGCAAGGGCGCATCACGAAGGTTTTAAATATGAAACCGCCAGAGATATTGTCTATGCTTGAGGAAGCTGCAGGGACAAGAATGTACGAGACAAAGAAAGAGGCTGCTCTAAAAACACTTGAGAAGAAGCAGAGTAAGGTTGATGAGATTAACAAACTTCTTGATCAGGAGATACTGCCTGCTCTGGAAAAATTAAGGAAAGAAAGGACACAGTACATGCAATGGGCTAATGGCAATGCTGAGTTAGATAGATTGAGAAGATTTTGTATTGCTTATGAGTATGTTCAAGCGGAGAGGATTAAAGAAAATGCTACTTCTGAGGTGGAACAAGTAAAAGCCAAGATAACTGAGATTGATGATAAAGCTAAGTCAACAATGGTGGAGGTAAAGGAAATGGAGACCAAAATAGCTCAGTTGACTGCTGAAAAGGAAGCAAGCATGGGTGGAGAAGCAAAATCTCTGTCAGAGAAGGTAGATGCACTGTCCCAGAATCTTGTGAAGGAAACATCTATACTGAACAATAAAGAAGACACTCTGAGGAGTGAAGAAGCCAGCAAAAAAAAAATTGTTAAAAATATTGAAGAATTGAAGCAATCTGTAGAAGAGAAGGCCTCTGCTGTTAAAAGGGCTGAAGAGGGAGCAGCTGATCTGAAAAATAGAGTTGATGAGCTCACAAAGAGTTTGGAGGAGCATGAAAAGGAATACCAGGGTGTTTTAGCTGGCAAGAGCAGCGGTGATGAGGAGAAATGCTTAGAGGATCAACTAGGTGATGCAAAGATAGCTGTGGGGAACGCTGAAACAGAATTGAAACAGCTGAAAACCAAAATTAGCCATTGTGAAAAGGAACTGAAAGAGAAAACAAATCAATTAAGGTCAAAACGTGAAGAGGCTATAGCTGTAGAAAAGGAGCTCAACAGTAGACGAAAAGATGTGGAAAATGTCAAAATGGGATTGGAGTCTCTTCCCTATAAAGAGGGTGAGATGGAAGCTTTGCAAAAGGAGCGTGAATCTGAGATGGACTGTGTGCAAAAGTTGAAGGATGAAATACGCAATATTTCGGCATACTTGGCAAATGTTGAATTCAAATATCGTGATCCTGTCAAGAACTTTGATAGGTCAAAGGTGAAAGGTGTTGTTGCAAAACTCATCAAAGTAAAGGATAGGTCCACAATGACTGCCCTAGAGGTTACAGCTGGTGGGAAGTTGTTTAATGTTGTTGTTGACACAGAAAATACTGGAAAGCAACTATTACAGAATGGTGATCTTAGAAGAAGAGTGACAATTATACCTTTGAACAAAATACAATCCAATTTTGTTCCCTCCAGAGTTCAACAGGCTGCTGTTAGATTGGTGGGTAAGGAAAATGCTGAAGTTGCACTTTCTTTGGTTGGTTATGATGAAGAATTGAAGAGTGCAATGGAATATGTCTTTGGTTCAACCTTTGTTTGCAAAACCATTGATGCTGCAAAAGAGGTGGCATTTAATCGGGAGATTCACACCACAAGTGTTACTCTTGAAGGAGATATATTTCAGCCAAGTGGTCTTCTGACTGGTGGAAGCCGAAAGGGTAGTGGTGATCTTTTGAGGCAACTTCATGCTTTGGCTGAGGCTGAGTCAAAACTTTCAGAGCATCAAAGAAGGTTATCAGAGATTGAGGCAAAGATCTCAAAGCTCCTTCCTCTTCAGAAAAAATTTAAAGACCTCAAAGCACAATTAGAGCTAAAGTCTTATGATCTTTCATTGTTTCAGAGCAGAGCTGAGCAAAATGAACATCATAAGCTTGGAGAATTAGTGAAAAAGATTGAACAAGAGCTTCAAGAAGCAAAATCTTCAGTCAAGGAAAAGCAAACTTTATATGAGGACTGTGTCAAGACTGTTTCATCACTTGAGAAATCAATCAAAGAACATGACAATAATCGAGAGAGTAGGCTAAAAGCCTTGGAGAAAAAGATAAAGTCAATAAAATCCCAAATGCAGTCATCTTTAAAAGATCTGAAGGGACATGATAATGAAAAGGAGAGGCTTGTAATGGAAATGGAAGCAGTTATCCAGGAGCAAGCATCCTTGGAGAATCAATTAGCATCAATGGGAACACAGATTAGTAATCTGACCTCAGAAGTAGAAGAACAAAGATCCACGGTTGCTGCTGGGAGGAATAATCTTGATCAAGTTCAGTCACAGCTAAATTCAGTTCGCCAGAAAATGAAGGAATGTGACAAGGAAATCAGTGGTATTATTAAACAGCAGCAAAAGCTTGAACATAAACTTAGTGAGAGTAATCTTGAAAGGAAGAGGATGGAAAATGAGGTAAAACGGATGGAGATGGAACAGCAAGATTGTTCTGTGAGGGTAGATAAATTAATAGAGAAGCATGCATGGATTGCTTCTGAAAAACAGATGTTTGGTAGAAGTGGGACCGATTATGATTTTTCTTCCCGTGATCCTGGTAAAGCAAGAGAAGAACTTGAGAAGCTTCAGGCTGAGCAATCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTAATGGCAATGTTTGAGAAGGCAGAAGACGAGTACAATGATTTAATGTCAAAGAAAAACATAATTGAGAATGACAAGTCTAAAATAAAGAAGGTGATTGAAGAGCTAGATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGATCAAAGTGAATAATGACTTTGGATCTATCTTTTCTACTCTATTACCGGGCACAATGGCTAAGTTAGAACCTCCAGAAGGATGCAGCTTTCTTGATGGTCTTGAGGTTCGTGTTGCATTCGGAAGTGTGTGGAAACAGTCATTGTCTGAACTGAGTGGAGGTCAGCGATCACTGCTTGCACTTTCTCTGATTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCTTGGATGAGGTTGATGCAGCTCTTGATTTGAGCCATACACAAAACATAGGGAGAATGATCAAGGCTCACTTTCCACACTCCCAGTTTATTGTGGTTTCACTGAAGGAAGGCATGTTCAATAACGCAAATGTTCTTTTCCGGACAAAATTTGTAGATGGTGTTTCAACCGTTCAGCGAACTGTTGCATCCAAACAAAACAAGTGA 3531 0.4058 MYIKEVCLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSDRSRSPLGYEDHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKERTQYMQWANGNAELDRLRRFCIAYEYVQAERIKENATSEVEQVKAKITEIDDKAKSTMVEVKEMETKIAQLTAEKEASMGGEAKSLSEKVDALSQNLVKETSILNNKEDTLRSEEASKKKIVKNIEELKQSVEEKASAVKRAEEGAADLKNRVDELTKSLEEHEKEYQGVLAGKSSGDEEKCLEDQLGDAKIAVGNAETELKQLKTKISHCEKELKEKTNQLRSKREEAIAVEKELNSRRKDVENVKMGLESLPYKEGEMEALQKERESEMDCVQKLKDEIRNISAYLANVEFKYRDPVKNFDRSKVKGVVAKLIKVKDRSTMTALEVTAGGKLFNVVVDTENTGKQLLQNGDLRRRVTIIPLNKIQSNFVPSRVQQAAVRLVGKENAEVALSLVGYDEELKSAMEYVFGSTFVCKTIDAAKEVAFNREIHTTSVTLEGDIFQPSGLLTGGSRKGSGDLLRQLHALAEAESKLSEHQRRLSEIEAKISKLLPLQKKFKDLKAQLELKSYDLSLFQSRAEQNEHHKLGELVKKIEQELQEAKSSVKEKQTLYEDCVKTVSSLEKSIKEHDNNRESRLKALEKKIKSIKSQMQSSLKDLKGHDNEKERLVMEMEAVIQEQASLENQLASMGTQISNLTSEVEEQRSTVAAGRNNLDQVQSQLNSVRQKMKECDKEISGIIKQQQKLEHKLSESNLERKRMENEVKRMEMEQQDCSVRVDKLIEKHAWIASEKQMFGRSGTDYDFSSRDPGKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWIKVNNDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVASKQNK. 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09734 1176 Coils Coil 736 763 - -
Seca3g09734 1176 Coils Coil 400 448 - -
Seca3g09734 1176 Coils Coil 178 198 - -
Seca3g09734 1176 PIRSF SMC 1 1156 IPR024704 GO:0005524|GO:0016887
Seca3g09734 1176 Coils Coil 982 1026 - -
Seca3g09734 1176 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Seca3g09734 1176 Coils Coil 324 379 - -
Seca3g09734 1176 Coils Coil 789 837 - -
Seca3g09734 1176 Gene3D - 426 589 - -
Seca3g09734 1176 FunFam Structural maintenance of chromosomes 2 1 202 - -
Seca3g09734 1176 Coils Coil 894 928 - -
Seca3g09734 1176 Coils Coil 859 886 - -
Seca3g09734 1176 Coils Coil 672 699 - -
Seca3g09734 1176 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Seca3g09734 1176 Gene3D - 994 1176 IPR027417 -
Seca3g09734 1176 FunFam Structural maintenance of chromosomes 2 518 583 - -
Seca3g09734 1176 Gene3D - 802 891 - -
Seca3g09734 1176 Gene3D - 1 202 IPR027417 -
Seca3g09734 1176 FunFam Structural maintenance of chromosomes 2 995 1174 - -
Seca3g09734 1176 SUPERFAMILY Tropomyosin 295 496 - -
Seca3g09734 1176 Coils Coil 239 287 - -
Seca3g09734 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1158 IPR027417 -
Seca3g09734 1176 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 1174 - -
Seca3g09734 1176 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Seca3g09734 1176 Coils Coil 473 493 - -
Seca3g09734 1176 Gene3D - 590 666 - -
Seca3g09734 1176 SUPERFAMILY Smc hinge domain 477 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Seca3g09734 1176 Pfam RecF/RecN/SMC N terminal domain 2 1161 IPR003395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09734 Seca-Chr3 239635021 239645839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09734 3 170 Structural Maintenance of Chromosomes family AT5G15920 22.619 5.14e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09734 K06674 - gmx:100788674 2060.42