Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09732 ATGGGAAAGAAAAACAAATTGAAGGAGAATGGTGGCAAAGAACACTGCCCCTTAACAATTTTTGTCTCCAATTTGCCCTACTCTTTTTCCAACTCTCAGCTTGAGGAGACATTCAGTGAGGTTGGACCTGTTAGGCGTTGCTTCATGGTCACACAGAAGGGGTCTGCCCAGCATCGTGGTTTTGGTTATGTCCAATTTGCTGTTGAGGAAGATGCTAATCGTGCTATTGAGCAAAAGAATGGTTCATCTGTTGGAGGCCGGAAAATTGTAGTGAAGCAAGCAATGCCCCGTCCTCCTCGTGATGAAAGACAATCAAAACCAAATCAAGTGGACAAGACAGATGATCTCATGAAGTCAGAAAATGATAAGGATGACAGATTATCTGGAGTAGAGAAGCCAGTTTCAGTTTTGAAGGAAGAAGAAGTACTAGTTTCAAATAAACAAAAAAACTCAAGGAAGCCCTTAGAAATGAAAAAAGCAACTCTTTGTAATGATGTGGCTGATGAGGGGGGTTGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTTGTGAATTCTGATATGGCCGAAGATGTTCACCGTCAAGCCAGAGAGATCGGCACTGTGTGTTCTATTAAGTACCCCCTTTCGAGGAAAGATCTTGAGCAGAATGGTCTCCTGCAGGATGGCTGTATTTTGGATGCTTCAGCTGTACTTTATACAAGTGTAAAGTCAGCTCGAGCTTCTGTTGCAGCGTTACATAAAAAAGAGATAGGAGGAGGAATTGTTTGGGCCCGTCAACTGGGTGGAGAGGGCTCCAAGACTAAAAAATGGAAGCTTATTGTCAGAAATCTTCCCTTCAAGGCCAAAGAAAATGAAATAAGAGATATGTTTTCATCTGCAGGGTATGTGTGGGATGTATTTATTCCACACAAATCAGACACAGGTCTGTCTAAGGGTTTTGCGTTTGTAAAATTCACCTGCAAGCTAGATGCGGAAAATGCCATTCAAAAGCTCAATGGATCAAAGTTTGAGAAACGGCTCATAGCTGTTGACTGGGCTGTTCCAAAAAAGATATTCAGTAGTGATAAAAATGATGCTCTTGCTTCAGAGACAGGGCAACAAAAGTTGAGAGATGATGATAGTAGAGCTACTGAGGACGATGTTGAGCATATTGACAAACAATCTTATGATGGAGATGATAGTAATGTAGATTACTCTAGTGCCATTGAGGAAGAAGGCAGTCCTTCTGAAGATAATTTTGAAAAGGAAGCAGACATCGCAAGAAAGGTCCTTAACAACTTGATTACATCTTCCACAAAAGGAGCATCTGTAAATAATGATTCGGTGTGTTCCAAAGAAAATAAGGAGCCAAAATCCAATGAAATTGTTAAAGATGCAGATAGTAAAGCATCTAATGAGTCTGAAAAGGTTTCAGGTGTTTCTGAGGCTGAAATTTCCGGCAGAAGCAAGTTATCAAATAAACAAACAGAAGATGATTTGCAAAGAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAATGAAGAAGTCAAACAACGATTTTCTGGATTTGGGGACGTAGAATACTTTCTTCCTGTTCTCCACCAAGTGACCAAGCGACCAAGAGGGACTGGTTTTCTTAAGTTCAAAACCGTAGAAGCTGCTGAAACTGCAATTTCAACGGCTAGTGCTGCTTCTGCAATGGGTATTTTACTGAAGGGTAGACCATTAAAAGTTTTAAAGGCTTTGGACAAGAAATCAGCTCATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTCATGACCACCGTAATATTTACTTGGCAAAGGAAGGACTTATCCTTGAGGGAACTCCAGTTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTGGAAAGGAAAAAGAAGACAAAGCTTCAATCTCCAAATTTTCATGTTTCAAGAACTAGACTTGTTATCTACAACATACCAAAGTCCATGACTGAAAAAGAACTAAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAGATGGAAAGAAAGGAAAGGTTTCTCAAGAACACCATTCACGTGGAGTTGCCTTTATTGAATTTTCGGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAATAACCCTGAAACTTTTGGTCCTGAACATCGGCCTATTGTGGAGTTTGCTCTTGATAATGTTCAAACACTAAAACTTCGGAAGGCAAAGCTCCAATCTCAGCAGCAGGCTCCTCATGATGACATTGCCAAGGAAAATGACAAACCTGTCATAGCAGAAGTTCAGACACATGTAAAGGACAGAAAACAAAAACGAAAATCTCAAGAGCATGATAATTCAGTAAAGGACTCGGTACTGAATACAAATGGTGAATTAGGTAGTCAAATGGCAAATGGAAAATCCCCTCAAGGCCGCAAATCCAAAAGACAGAAAGGCAACAATCAGAATGCAAATGCTGAATCACTAAAAGAAAATGCAAAAGCATTGTCCAAGAAGTCAAAGAATAACCGAGATGGCCAGAATCATGGTGATGCATCTCTTGAAGGTCAAAACACTGGCATTGGCAGTAGTGGAACAAAATCGGGAAACAAAGATAATGTTGGATTTAGAAAAAGGAAGATGCAAAACCAAGAACAAGCAGGCCAAAAGGTTTCTAAGAAACGACCAAAGAAGAATAAAGATTCAGTAGGGAAGGATGTAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACACAAGGATTCCCAAGGGAATGATGGTGAGAAAAAAGCTTCTAAACAACTTAGAAAATGGTTCCAATCATAG 2886 0.4002 MGKKNKLKENGGKEHCPLTIFVSNLPYSFSNSQLEETFSEVGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIEQKNGSSVGGRKIVVKQAMPRPPRDERQSKPNQVDKTDDLMKSENDKDDRLSGVEKPVSVLKEEEVLVSNKQKNSRKPLEMKKATLCNDVADEGGCSEKQRVARTVIFGGLVNSDMAEDVHRQAREIGTVCSIKYPLSRKDLEQNGLLQDGCILDASAVLYTSVKSARASVAALHKKEIGGGIVWARQLGGEGSKTKKWKLIVRNLPFKAKENEIRDMFSSAGYVWDVFIPHKSDTGLSKGFAFVKFTCKLDAENAIQKLNGSKFEKRLIAVDWAVPKKIFSSDKNDALASETGQQKLRDDDSRATEDDVEHIDKQSYDGDDSNVDYSSAIEEEGSPSEDNFEKEADIARKVLNNLITSSTKGASVNNDSVCSKENKEPKSNEIVKDADSKASNESEKVSGVSEAEISGRSKLSNKQTEDDLQRTVFISNLPFECDNEEVKQRFSGFGDVEYFLPVLHQVTKRPRGTGFLKFKTVEAAETAISTASAASAMGILLKGRPLKVLKALDKKSAHDKELEKAKNEVHDHRNIYLAKEGLILEGTPVAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLVIYNIPKSMTEKELKKLCIDAVISRATKQKPVIRQIKFLKDGKKGKVSQEHHSRGVAFIEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQSQQQAPHDDIAKENDKPVIAEVQTHVKDRKQKRKSQEHDNSVKDSVLNTNGELGSQMANGKSPQGRKSKRQKGNNQNANAESLKENAKALSKKSKNNRDGQNHGDASLEGQNTGIGSSGTKSGNKDNVGFRKRKMQNQEQAGQKVSKKRPKKNKDSVGKDVVDKLDMLIEQYRSKFSHKDSQGNDGEKKASKQLRKWFQS. 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09732 961 MobiDBLite consensus disorder prediction 361 418 - -
Seca3g09732 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 500 583 IPR000504 GO:0003723
Seca3g09732 961 MobiDBLite consensus disorder prediction 803 845 - -
Seca3g09732 961 Gene3D - 261 390 IPR012677 -
Seca3g09732 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 353 IPR000504 GO:0003723
Seca3g09732 961 Coils Coil 834 858 - -
Seca3g09732 961 CDD RRM2_RBM28_like 276 352 - -
Seca3g09732 961 FunFam Putative RNA binding ribonucleoprotein 430 597 - -
Seca3g09732 961 PANTHER RNA-BINDING MOTIF PROTEIN 14B 15 961 - -
Seca3g09732 961 CDD RRM1_RBM28_like 19 97 - -
Seca3g09732 961 MobiDBLite consensus disorder prediction 440 495 - -
Seca3g09732 961 MobiDBLite consensus disorder prediction 370 397 - -
Seca3g09732 961 Gene3D - 2 109 IPR012677 -
Seca3g09732 961 Gene3D - 433 597 IPR012677 -
Seca3g09732 961 MobiDBLite consensus disorder prediction 758 961 - -
Seca3g09732 961 FunFam - 2 129 - -
Seca3g09732 961 SUPERFAMILY RNA-binding domain, RBD 500 730 IPR035979 GO:0003676
Seca3g09732 961 MobiDBLite consensus disorder prediction 94 131 - -
Seca3g09732 961 MobiDBLite consensus disorder prediction 864 886 - -
Seca3g09732 961 Coils Coil 578 605 - -
Seca3g09732 961 CDD RRM4_RBM28_like 652 749 - -
Seca3g09732 961 MobiDBLite consensus disorder prediction 471 488 - -
Seca3g09732 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Seca3g09732 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 346 IPR000504 GO:0003723
Seca3g09732 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 502 560 IPR000504 GO:0003723
Seca3g09732 961 MobiDBLite consensus disorder prediction 77 131 - -
Seca3g09732 961 MobiDBLite consensus disorder prediction 914 955 - -
Seca3g09732 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Seca3g09732 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 652 760 IPR000504 GO:0003723
Seca3g09732 961 SUPERFAMILY RNA-binding domain, RBD 272 355 IPR035979 GO:0003676
Seca3g09732 961 SMART rrm1_1 19 92 IPR000504 GO:0003723
Seca3g09732 961 SMART rrm1_1 276 349 IPR000504 GO:0003723
Seca3g09732 961 SMART rrm1_1 501 579 IPR000504 GO:0003723
Seca3g09732 961 SMART rrm1_1 653 744 IPR000504 GO:0003723
Seca3g09732 961 MobiDBLite consensus disorder prediction 769 802 - -
Seca3g09732 961 MobiDBLite consensus disorder prediction 847 863 - -
Seca3g09732 961 MobiDBLite consensus disorder prediction 449 470 - -
Seca3g09732 961 Gene3D - 651 746 IPR012677 -
Seca3g09732 961 Coils Coil 743 763 - -
Seca3g09732 961 SUPERFAMILY RNA-binding domain, RBD 19 261 IPR035979 GO:0003676
Seca3g09732 961 FunFam RNA-binding motif protein 28 651 746 - -
Seca3g09732 961 CDD RRM3_RBM28_like 500 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09732 Seca-Chr3 239597103 239610857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09732 19 98 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 5.53e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09732 K14573 - gmx:100794821 1476.07