Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09731 ATGCAATGCTTGTGGTTTCTTATGAGTGATAGGATGAAGCCTTTTGCTGGAGGGAAAGATAGTGAACGCGGAGAAAAGAGGCATCGTGATGATGATTTTGACTTATTTTCCATTCCCGAATTATCAAAAGGGTTAAGTGCAAGAAATTTTGGAAGTAAGAGCAATGAAATAGAAGCTCTTTGTGCTAGAAGATCAAAATCCCTGAAACATGGCACTGTGATGAGTCCCAATTCTTCAGATGCTCATGTAGATGCACCAGTTAGACTTTATGAACAGTCAATACCAACAAAATGGCAAATAAATCAGTTGTCACAAGGCAATGATGGCCATATTTTGCATGGTAATGTAGATCATAGATCATATGATGAAGTTAATGGAGATAGAAGGCACAGTCATCTTCATGGGAAGTCTAAGCAGAAAGAGCCTGCTGGAAGAATTCCTACGAAAATCTTAATGTTTCATGTTGTAATAGAAACTCCAATACAATTCCTGTTACCTTTGCTATTCTGCATACTCTTTTATTTTGCAAAAATTGAGGAACAAGAACTACTGAGAACTTGGGCTGGTGCTGGAGATACCCCAATAGCTGAGAACGCAAAAGATGAAGGTTGTGGTCATGATTATATATCGAAGGATGACATTGGCAAAGTATGTCGTGTTTGTGGAGTTATTAAGATAGGAATTGAATCCATCATCGAATATCCATCCAAGAAGGGAAAAAGGAGTTCACGAACTTATGTATCTGAGTCTCGAAATTCAAGTGACAAAGGATCAACCAAGATTTCACAAAGTAGATTTAAATTTTCTAGGGAAGAATTAATGCCAACTGGACTTTCTCCTCATCCAAGGCACATGAAGCAAATGAAACTTCATCAAGTGGAGGGATTTAACTTTCTTTGTAGTAACCTCATAACAGATAATCCAGGGGGTTGCATTCTAGCTCATGCTCCAGGTTCTGGAAAGACCTTTATGGTTATAAGTTTTATGCAAAGTTACCTTGCTTCATCACCCGGTGCCAGGCCACTAGTTGTTCTACCAAAAGGAATCTTAGATACATGGAAGAAAGAGTTTCGAACATGGCAAGTGGAGGACATTCCATTATATGATTTTTACTCAGCAAAAGCAGATAGCCGGGCTCAGCAGTTGGAAGTTCTGAAGAAATGGGTGAAGCATAAAGGTATCCTATTTTTGGGCTATCAACAATTTTCTTCCATTATTTGTGACAATGAAAAAGAATCAGCAGTGTCAGAGTGTCAAGAAATACTATTGGAAGTCCCTACAGTGCTTTTTCTAGATGAAGGTCACACTCCAAGAAATGAGGACACTAATGTGCTTCAAACTCTTAAGAAAGTTCACACGCCTCTAAAAGTTTTATTGTCAGGAACTATTTACCAAAACCATGTGAAAGAGGTGTTTAGTCTTGTGAAGCTTGTTCGACCAAAGTTCATGAGGTTAGAAACTACTTGTGATATACAAAGGCGCATAATGTCTAGAGTGTCAACACCACACACTTCAAAATATGTCCCAGAGGAGGTATTCTTTAACTCGGTGGAGAAGACACTACAAGATAAGGATGGTTTCAAACAGAAGGCAGCTGTTGTACGTGATCTTCGTGAGATGACCAGCAAGATTCTTCATTACTATAAAGGTGACTCTCTTGATGACCTCCCTGGTCTTGTTGATTATACCTTGTTACTCAATCTTAGTTTAACACAGAAAAGTGAAATTGAGAAGTTAAAACAGCTTGAACATTTTAAGAAAGCTTCTGTGGGAAGTCTCTTGTATGTACATCCACAACTAAAATCTTTGTCAGAAGAGTTATCCTCTAATCCGGAGAAGAGGTTCTCGTTTGGTGATAAAAAGATGGATGCCATAGTGAAAAGCCTGATCCCAAGAGATGGAGTTAAAGCCAAATTCTTCCTTAACATGTTGAACCTGTGTGAATCAGCTGGTGAGAAGCTTTTGGTATTTAGTCAGTATATCCTCCCCCTGAAACTCTTTGAGAAAATGTCGGTGCATTCCAAAGGGTGGAGTCGTGATAAAGAATTGTTCATGATAACTGGTGGTTCAAGCCATGAACATAGGGAATGGTCCATGGAACGTTTTAACAACTCTCCTCATGCTAAAGTCTTGTTTGGTTCAATCAAAGCTTGTGGGGAAGGAATTTCTTTAGTTGGGGCTTCACGCATTATCATATTAGATGTTCATCTTAACCCCTCAGTGACTAGACAGGCCATAGGGCGTGCATTTAGACCTGGTCAGAAGAGAAAAGTATACACATATAGGTTGATTGCTGCTGATTCACCTGAGGAGGATGATCATAAGACTTGCTTCAGAAAGGAGTCGATTGCAAAGATGTGGTTTGAGTGGAATGGGAACTTTGGGAACCAACAATTTGCAATGAAGGCCATTGATGTTAATGAATGTGGTGACCCTTTTCTGGAAAGTTCATCCTTGCGGGATGATATAAAGACCTTGTACACAAGGTAA 2490 0.3928 MQCLWFLMSDRMKPFAGGKDSERGEKRHRDDDFDLFSIPELSKGLSARNFGSKSNEIEALCARRSKSLKHGTVMSPNSSDAHVDAPVRLYEQSIPTKWQINQLSQGNDGHILHGNVDHRSYDEVNGDRRHSHLHGKSKQKEPAGRIPTKILMFHVVIETPIQFLLPLLFCILFYFAKIEEQELLRTWAGAGDTPIAENAKDEGCGHDYISKDDIGKVCRVCGVIKIGIESIIEYPSKKGKRSSRTYVSESRNSSDKGSTKISQSRFKFSREELMPTGLSPHPRHMKQMKLHQVEGFNFLCSNLITDNPGGCILAHAPGSGKTFMVISFMQSYLASSPGARPLVVLPKGILDTWKKEFRTWQVEDIPLYDFYSAKADSRAQQLEVLKKWVKHKGILFLGYQQFSSIICDNEKESAVSECQEILLEVPTVLFLDEGHTPRNEDTNVLQTLKKVHTPLKVLLSGTIYQNHVKEVFSLVKLVRPKFMRLETTCDIQRRIMSRVSTPHTSKYVPEEVFFNSVEKTLQDKDGFKQKAAVVRDLREMTSKILHYYKGDSLDDLPGLVDYTLLLNLSLTQKSEIEKLKQLEHFKKASVGSLLYVHPQLKSLSEELSSNPEKRFSFGDKKMDAIVKSLIPRDGVKAKFFLNMLNLCESAGEKLLVFSQYILPLKLFEKMSVHSKGWSRDKELFMITGGSSHEHREWSMERFNNSPHAKVLFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKRKVYTYRLIAADSPEEDDHKTCFRKESIAKMWFEWNGNFGNQQFAMKAIDVNECGDPFLESSSLRDDIKTLYTR. 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09731 829 Gene3D - 256 512 IPR038718 -
Seca3g09731 829 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 196 828 IPR044567 GO:0080188
Seca3g09731 829 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 617 807 IPR001650 -
Seca3g09731 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 503 IPR027417 -
Seca3g09731 829 SMART ultradead3 284 494 IPR014001 -
Seca3g09731 829 Pfam Helicase conserved C-terminal domain 640 752 IPR001650 -
Seca3g09731 829 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 302 481 IPR014001 -
Seca3g09731 829 MobiDBLite consensus disorder prediction 246 264 - -
Seca3g09731 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 791 IPR027417 -
Seca3g09731 829 MobiDBLite consensus disorder prediction 243 264 - -
Seca3g09731 829 Gene3D - 557 816 IPR027417 -
Seca3g09731 829 SMART helicmild6 670 753 IPR001650 -
Seca3g09731 829 Pfam SNF2-related domain 307 576 IPR000330 GO:0005524|GO:0140658
Seca3g09731 829 CDD SF2_C_SNF 636 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09731 Seca-Chr3 239577966 239583191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09731 650 783 RAD5 or RAD16-like Gene Family AT5G43530 35.075 3.43e-15 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g09731 SNF2_N 2.7e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09731 K10875 - qsu:112032205 838.95