Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09730 ATGTCTGATTCATGGAATGCCAAAGAAAAAGCTGATGTATTTGGAATTAAGGTTGCTGAAGACAATCTCATGGTAACTGAAATCTCAGCGCATCCTAGACATATGAAACTAATGAGACCGCACCAAGTCGAAGGATTCAATTTTCTTGTTAGAAATCTGGCGGGTGACGACCCTGGCGGATGCATCTTGGCCCATGCTCCAGGATCTGGGAAAACATTTATGATTATCAGTTTCATGCAGAGTTTTCTAGGCAAATATCCTGATGCTAGACCTCTAGTGGTGCTTCCTAAGGGAATATTGTCAACTTGGAAAAAGGAGTTTCAAACATGGCAGGTGGAGGACATACCACTGTATGATTTTTACACTGTGAAGGCAGACAGTAGATCTCAGCAACTGGCAGTGTTGAACAAATGGATGGGACACAGGAGTATCCTTTTCTTAGGATACCAACAATTTTCTAAAATTGTTTGTGAGAATGGTACTAACGAGGTTTCAAAGAGGTGTCAAGAGATATTGCTTAAGGTTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCAAGGAATGAAAATACCGATATGGTACAATCCCTTGCGAAAGTACAGACACCCAGAAAAGTTGTACTTTCAGGGACCCTATATCAGAATCATGTCAGGGAGGTATTTAACATCTTAAATCTTGTGCGGCCAAAGTTTTTAAAAATGGAAACATCTAAGCCCATTGTGAAGCGCATTCAAAGTAGAGTACATATATCTGGCGTGAGAACTTTCTACGATTTGGTTGAAAACACTTTGCAGAAGGACACAGATTTTAAAAGGAAGGTGGCTGTTATACAAGATTTGCGTGAAATGACAAGCAAGGTACTTCACTATTACAAAGGAGATTTTCTTGATGAGCTTCCAGGTCTTGTGGATTTCACCGTGCTACTCAAGCTTACCCCGAGACAGAAGCAAGAAGCTGAGAAATTGAAGAAGATACTTAAAAAGTTCAAGGTATCTTCTGTAGGCAGTGCTGTCTATCTTCACCCTAAATTGAAACCCATTGCGGAAAAATGTGATGGTGAAAAATGCATATCTGATAACATGATGGATGATCTAATAGAGAAACTAGATGTGAAAGATGGGGTGAAGACAAAATTCTTTCGCAATATGCTAAACCTGTGCGAATCAGCTGGGGAGAAGCTTCTGGTGTTTAGTCAATATCTCTTGCCTTTGAAATATTTAGAAAGGCTAATTATGAAGTGGAAGGGCTGGAGTCTTGGAAAAGAAATTTTTGTAATCTCAGGAGAGTCAAGCTCTGAACAAAGGGAATGGTCCATGGAACGTTTTAACAACTCTCCTGATGCTAAAGTTTTCTTTGGCTCTATTAAAGCTTGTGGTGAAGGAATTTCTTTAGTAGGGGCTTCACGCATTATCATATTAGATGTTCATCTTAACCCCTCAGTAACTAGACAGGCCATAGGCCGTGCATTTCGACCTGGTCAGAAGAGAAAAGTATACACATATAGGTTGATTGCTGCTGATTCACCTGAGGAGGAAGATCATGAGACATGCTTCAGAAAGGAGTCAATTTCAAAAATGTGGTTTGAGTGGAATGAGTATTGTGGTGATCGCGCATTTGAAGTTGAGACGGTCAGTGTGGAAGATTGTGGGGATCAGTTTCTTGAAAGTCCGTTGTTAGGGGAAGATGTTAAAGCTCTGTATAAAAGGTAG 1713 0.4016 MSDSWNAKEKADVFGIKVAEDNLMVTEISAHPRHMKLMRPHQVEGFNFLVRNLAGDDPGGCILAHAPGSGKTFMIISFMQSFLGKYPDARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLAVLNKWMGHRSILFLGYQQFSKIVCENGTNEVSKRCQEILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSKPIVKRIQSRVHISGVRTFYDLVENTLQKDTDFKRKVAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLKLTPRQKQEAEKLKKILKKFKVSSVGSAVYLHPKLKPIAEKCDGEKCISDNMMDDLIEKLDVKDGVKTKFFRNMLNLCESAGEKLLVFSQYLLPLKYLERLIMKWKGWSLGKEIFVISGESSSEQREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKRKVYTYRLIAADSPEEEDHETCFRKESISKMWFEWNEYCGDRAFEVETVSVEDCGDQFLESPLLGEDVKALYKR. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09730 570 SMART helicmild6 406 494 IPR001650 -
Seca3g09730 570 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 380 546 IPR001650 -
Seca3g09730 570 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 26 569 IPR044567 GO:0080188
Seca3g09730 570 Pfam Helicase conserved C-terminal domain 385 493 IPR001650 -
Seca3g09730 570 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 231 IPR014001 -
Seca3g09730 570 Gene3D - 301 554 IPR027417 -
Seca3g09730 570 SMART ultradead3 34 244 IPR014001 -
Seca3g09730 570 Gene3D - 6 259 IPR038718 -
Seca3g09730 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 532 IPR027417 -
Seca3g09730 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 254 IPR027417 -
Seca3g09730 570 CDD SF2_C_SNF 368 505 - -
Seca3g09730 570 Pfam SNF2-related domain 57 268 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09730 Seca-Chr3 239559287 239561523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09730 277 524 RAD5 or RAD16-like Gene Family AT5G43530 28.346 1.58e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g09730 SNF2_N 2.7e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09730 K10875 - gmx:100780454 999.193